RFX4 (Monodelphis domestica)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMODG00000001661 T318346_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.691 1.000
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.691 1.000
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.691 1.000
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.691 1.000
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.691 1.000
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.691 0.981
Rfx6
M09365_2.00 		Mus musculus
BDGTWKCYNDG
CHNRGMAACHV		 Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C 		0.652 0.717
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000002032 RFX 1 53

Links

Other RFX family TFs
Other Monodelphis domestica TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSOANG00000005534 Ornithorhynchus anatinus ENSOANG00000005534 I 0.691
ENSNLEG00000006695 Nomascus leucogenys ENSNLEG00000006695 I 0.691
Rfx4 Mus musculus ENSMUSG00000020037 D 0.691
ENSOARG00000017616 Ovis aries ENSOARG00000017616 I 0.691
RFX4 Oryctolagus cuniculus ENSOCUG00000028228 I 0.691
ENSPPYG00000004906 Pongo abelii ENSPPYG00000004906 I 0.691
ENSPANG00000006357 Papio anubis ENSPANG00000006357 I 0.691
RFX4 Otolemur garnettii ENSOGAG00000003546 I 0.691
RFX4 Macaca mulatta ENSMMUG00000022118 I 0.691
RFX4 Myotis lucifugus ENSMLUG00000016257 I 0.691
ENSGMOG00000004267 Gadus morhua ENSGMOG00000004267 I 0.691
RFX4 Gorilla gorilla ENSGGOG00000007759 I 0.691
RFX4 Gallus gallus ENSGALG00000012647 I 0.691
ENSLACG00000017280 Latimeria chalumnae ENSLACG00000017280 I 0.691
RFX4 Loxodonta africana ENSLAFG00000014122 I 0.691
RFX4 Meleagris gallopavo ENSMGAG00000012867 I 0.691
ENSLOCG00000015258 Lepisosteus oculatus ENSLOCG00000015258 I 0.691
ENSPSIG00000015178 Pelodiscus sinensis ENSPSIG00000015178 I 0.691
RFX4 Pan troglodytes ENSPTRG00000005391 I 0.691
Brh_R002885 Buceros rhinoceros Brh_R002885 I 0.691
Alligator_sinensis_CCG009361.1 Alligator sinensis Alligator_sinensis_CCG009361.1 I 0.691
Afo_R011060 Aptenodytes forsteri Afo_R011060 I 0.691
ENSBTAP00000000169-D1 Bos grunniens ENSBTAP00000000169-D1 I 0.691
ENSP00000350552 Macaca fascicularis ENSP00000350552 I 0.691
Pvit_09762 Pogona vitticeps Pvit_09762 I 0.691
Myotis_brandtii_RFX4_10020417 Myotis brandtii Myotis_brandtii_RFX4_10020417 I 0.691
Gfo_R004629 Geospiza fortis Gfo_R004629 I 0.691
Aan_R008662 Calypte anna Aan_R008662 I 0.691
RFX4 Tursiops truncatus ENSTTRG00000010688 I 0.691
ENSSHAG00000013027 Sarcophilus harrisii ENSSHAG00000013027 I 0.691
Rfx4 Rattus norvegicus ENSRNOG00000051536 I 0.691
RFX4 Pteropus vampyrus ENSPVAG00000005862 I 0.691
ENSSSCG00000000168 Sus scrofa ENSSSCG00000000168 I 0.691
RFX4 Tupaia belangeri ENSTBEG00000014680 I 0.691
ENSTSYG00000008562 Tarsius syrichta ENSTSYG00000008562 I 0.691
ENSTGUG00000011025 Taeniopygia guttata ENSTGUG00000011025 I 0.691
RFX4 Homo sapiens ENSG00000111783 D 0.691
RFX4 Ochotona princeps ENSOPRG00000008616 I 0.691
RFX4 Cavia porcellus ENSCPOG00000001750 D 0.691
ENSCSAG00000002952 Chlorocebus sabaeus ENSCSAG00000002952 I 0.691
RFX4 Dasypus novemcinctus ENSDNOG00000000799 I 0.691
RFX4 Equus caballus ENSECAG00000005111 I 0.691
ENSFALG00000013407 Ficedula albicollis ENSFALG00000013407 I 0.691
RFX4 Canis familiaris ENSCAFG00000001813 I 0.691
RFX4 Anolis carolinensis ENSACAG00000015355 I 0.691
ENSAMEG00000016059 Ailuropoda melanoleuca ENSAMEG00000016059 I 0.691
ENSAPLG00000005849 Anas platyrhynchos ENSAPLG00000005849 I 0.691
RFX4 Felis catus ENSFCAG00000015618 I 0.691
Rfx4 Dipodomys ordii ENSDORG00000003959 I 0.691
rfx4 Danio rerio ENSDARG00000026395 I 0.690
ENSAMXG00000020148 Astyanax mexicanus ENSAMXG00000020148 I 0.690
ENSPFOG00000016523 Poecilia formosa ENSPFOG00000016523 I 0.689
rfx4 Tetraodon nigroviridis ENSTNIG00000012137 I 0.689
rfx4 Gasterosteus aculeatus ENSGACG00000011830 I 0.689
ENSXMAG00000001638 Xiphophorus maculatus ENSXMAG00000001638 I 0.689
rfx4 Takifugu rubripes ENSTRUG00000008925 I 0.689
ENSONIG00000014750 Oreochromis niloticus ENSONIG00000014750 I 0.689
rfx4 Oryzias latipes ENSORLG00000011114 I 0.689
Sakowv30039514m.g Saccoglossus kowalevskii Sakowv30039514m.g I 0.689
ENSMPUG00000012144 Mustela putorius furo ENSMPUG00000012144 I 0.688
CapteG183181 Capitella teleta CapteG183181 I 0.686
RFX4 Procavia capensis ENSPCAG00000005023 I 0.678
DAPPUDRAFT_42744 Daphnia pulex DAPPUDRAFT_42744 I 0.677
tetur18g01090 Tetranychus urticae tetur18g01090 I 0.677
HelroG184328 Helobdella robusta HelroG184328 I 0.676
Aqu1.223491 Amphimedon queenslandica Aqu1.223491 I 0.676
CGI_10018775 Crassostrea gigas CGI_10018775 I 0.676
LotgiG113173 Lottia gigantea LotgiG113173 I 0.676
ML02801a Mnemiopsis leidyi ML02801a I 0.673
NEMVEDRAFT_v1g122918 Nematostella vectensis NEMVEDRAFT_v1g122918 I 0.668
PHUM236330 Pediculus humanus PHUM236330 I 0.665
Sakowv30020494m.g Saccoglossus kowalevskii Sakowv30020494m.g I 0.664
NEMVEDRAFT_v1g110404 Nematostella vectensis NEMVEDRAFT_v1g110404 I 0.663
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.661
XP_002167174.1 Hydra magnipapillata XP_002167174.1 I 0.660
CGI_10006760 Crassostrea gigas CGI_10006760 I 0.660
SPU_008404 Strongylocentrotus purpuratus SPU_008404 I 0.658
SPU_002235 Strongylocentrotus purpuratus SPU_002235 I 0.658
SMAR012474 Strigamia maritima SMAR012474 I 0.657
CapteG108705 Capitella teleta CapteG108705 I 0.657
ENSSTOG00000015740 Ictidomys tridecemlineatus ENSSTOG00000015740 I 0.654
Tal_R013010 Tyto alba Tal_R013010 I 0.654
XP_002943959 Xenopus tropicalis XP_002943959 I 0.654
rfx6 Takifugu rubripes ENSTRUG00000008447 I 0.653
PTSG_00258 Salpingoeca rosetta PTSG_00258 I 0.653
Sakowv30020492m.g Saccoglossus kowalevskii Sakowv30020492m.g I 0.653
ENSXMAG00000015726 Xiphophorus maculatus ENSXMAG00000015726 I 0.652
RFX6 Tursiops truncatus ENSTTRG00000011052 I 0.652
ENSTSYG00000008237 Tarsius syrichta ENSTSYG00000008237 I 0.652
RFX6 Homo sapiens ENSG00000185002 I 0.652
RFX6 Anolis carolinensis ENSACAG00000014185 I 0.652
RFX6 Vicugna pacos ENSVPAG00000002198 I 0.652
rfx6 Xenopus tropicalis XB-GENE-1013164 I 0.652
ENSBTAP00000000329-D1 Bos grunniens ENSBTAP00000000329-D1 I 0.652
ENSMMUP00000022612 Macaca fascicularis ENSMMUP00000022612 I 0.652
Tal_R000797 Tyto alba Tal_R000797 I 0.652
Gfo_R016155 Geospiza fortis Gfo_R016155 I 0.652
Brh_R008084 Buceros rhinoceros Brh_R008084 I 0.652
Afo_R005589 Aptenodytes forsteri Afo_R005589 I 0.652
NEMVEDRAFT_v1g85569 Nematostella vectensis NEMVEDRAFT_v1g85569 I 0.652
tetur35g00700 Tetranychus urticae tetur35g00700 I 0.652
Aan_R009636 Calypte anna Aan_R009636 I 0.652
SMU15015144 Schmidtea mediterranea SMU15015144 I 0.652
rfx6.L Xenopus laevis XB-GENE-6488525 I 0.652
RFX6 Taeniopygia guttata ENSTGUG00000011924 I 0.652
ENSONIG00000015740 Oreochromis niloticus ENSONIG00000015740 I 0.652
RFX6 Macaca mulatta ENSMMUG00000017189 I 0.652
RFX6 Otolemur garnettii ENSOGAG00000011937 I 0.652
rfx6 Tetraodon nigroviridis ENSTNIG00000009728 I 0.652
RFX6 Dasypus novemcinctus ENSDNOG00000019162 I 0.652
RFX6 Myotis lucifugus ENSMLUG00000006665 I 0.652
ENSPANG00000008240 Papio anubis ENSPANG00000008240 I 0.652
RFX6 Callithrix jacchus ENSCJAG00000004349 I 0.652
ENSFALG00000011057 Ficedula albicollis ENSFALG00000011057 I 0.652
RFX6 Loxodonta africana ENSLAFG00000003465 I 0.652
ENSNLEG00000013258 Nomascus leucogenys ENSNLEG00000013258 I 0.652
RFX6 Erinaceus europaeus ENSEEUG00000001945 I 0.652
ENSMPUG00000014252 Mustela putorius furo ENSMPUG00000014252 I 0.652
ENSCSAG00000015856 Chlorocebus sabaeus ENSCSAG00000015856 I 0.652
RFX6 Monodelphis domestica ENSMODG00000017815 I 0.652
RFX6 Oryctolagus cuniculus ENSOCUG00000013227 I 0.652
ENSLACG00000004044 Latimeria chalumnae ENSLACG00000004044 I 0.652
ENSOARG00000008929 Ovis aries ENSOARG00000008929 I 0.652
ENSPFOG00000003162 Poecilia formosa ENSPFOG00000003162 I 0.652
RFX6 Gallus gallus ENSGALG00000014918 I 0.652
RFX6 Meleagris gallopavo ENSMGAG00000013368 I 0.652
RFX6 Felis catus ENSFCAG00000018903 I 0.652
ENSSHAG00000009393 Sarcophilus harrisii ENSSHAG00000009393 I 0.652
ENSSTOG00000012365 Ictidomys tridecemlineatus ENSSTOG00000012365 I 0.652
RFX6 Tupaia belangeri ENSTBEG00000011557 I 0.652
Rfx6 Dipodomys ordii ENSDORG00000013591 I 0.652
ENSAMEG00000005843 Ailuropoda melanoleuca ENSAMEG00000005843 I 0.652
rfx6 Gasterosteus aculeatus ENSGACG00000005840 I 0.652
RFX6 Sorex araneus ENSSARG00000012002 I 0.652
ENSAPLG00000002929 Anas platyrhynchos ENSAPLG00000002929 I 0.652
ENSPSIG00000008368 Pelodiscus sinensis ENSPSIG00000008368 I 0.652
ENSMICG00000009092 Microcebus murinus ENSMICG00000009092 I 0.652
ENSPPYG00000016960 Pongo abelii ENSPPYG00000016960 I 0.652
RFX6 Canis familiaris ENSCAFG00000000915 I 0.652
RFX6 Bos taurus ENSBTAG00000000264 I 0.652
RFX6 Pteropus vampyrus ENSPVAG00000000614 I 0.652
RFX6 Pan troglodytes ENSPTRG00000018540 I 0.652
Rfx6 Mus musculus ENSMUSG00000019900 D 0.652
ENSORLG00000018626 Oryzias latipes ENSORLG00000018626 I 0.651
SPU_025817 Strongylocentrotus purpuratus SPU_025817 I 0.651
SMAR001902 Strigamia maritima SMAR001902 I 0.651
ENSAMXG00000017899 Astyanax mexicanus ENSAMXG00000017899 I 0.651
ENSLOCG00000017133 Lepisosteus oculatus ENSLOCG00000017133 I 0.651
DI09_91p30 Microsporidia sp DI09_91p30 I 0.651
DI09_1p30 Microsporidia sp DI09_1p30 I 0.651
rfx6 Danio rerio ENSDARG00000041702 I 0.651
RFX6 Cavia porcellus ENSCPOG00000015023 I 0.651
PTSG_10225 Salpingoeca rosetta PTSG_10225 I 0.650
ENSOANG00000020392 Ornithorhynchus anatinus ENSOANG00000020392 I 0.650