RFX2 (Oryctolagus cuniculus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSOCUG00000005005 T318391_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX2
M03454_2.00
Homo sapiens
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
RFX2_1
0.778 1.000
RFX2
M03455_2.00
Homo sapiens
SGTTGCTARGCAACS

SGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
RFX2_2
0.778 1.000
RFX2
M05719_2.00
Homo sapiens
NGTWDYYATRRHWACN

NGTWDYYATRRHWACN
SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX
0.778 1.000
RFX2
M09362_2.00
Homo sapiens
YNGTTGCCATGGVRACVV

BBGTYBCCATGGCAACNR
Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A
0.778 1.000
RFX2
M09628_2.00
Homo sapiens
BGTTKCCATGGMAAC

GTTKCCATGGMAACV
Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402
0.778 1.000
RFX2
M05720_2.00
Homo sapiens
BGTTRCCATGRYAACV

BGTTRYCATGGYAACV
SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX
0.778 1.000
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.776 0.987
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV

BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.776 0.987
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY

RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.776 0.987
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS

SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.776 0.987
RFX3
M03452_2.00
Homo sapiens
NGTTRCCATGGHAACV

BGTTDCCATGGYAACN
SELEX
Jolma et al.(2013)
RFX3_1
0.775 0.962
RFX3
M03453_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Jolma et al.(2013)
RFX3_2
0.775 0.962
RFX3
M02750_2.00
Homo sapiens
GTTRYYATGG

CCATRRYAAC
SELEX
Jolma et al.(2010)
RFX3_dimer
0.775 0.962
RFX3
M05715_2.00
Homo sapiens
NGTTRYYATRRYAACN

NGTTRYYATRRYAACN
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1
0.775 0.962
RFX3
M05716_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2
0.775 0.962
RFX3
M09361_2.00
Homo sapiens
BGTTRCCATGGYRN

NYRCCATGGYAACV
Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B
0.775 0.962
RFX3
M09627_2.00
Homo sapiens
BNGTTGCCATGGCAAC

GTTGCCATGGCAACNV
Misc
Heinz et al.(2010)
K562-RFX3_SRA012198
0.775 0.962
RFX3
M05717_2.00
Homo sapiens
BGTTRYYATRRYAACV

BGTTRYYATRRYAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1
0.775 0.962
RFX3
M05718_2.00
Homo sapiens
BGTTGCTARGCAACV

BGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2
0.775 0.962
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG

CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.767 0.962
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV

BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.767 0.962
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN

NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.764 0.923
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS

SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.764 0.923
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC

GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.764 0.923
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN

NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.759 0.846
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN

NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.759 0.846
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV

BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.759 0.846
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC

GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.759 0.846
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.759 0.846
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.759 0.846
RFX1
M11245_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.759 0.846
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN

NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.759 0.846
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN

NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.759 0.846
RFX1
M11248_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.759 0.846
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.759 0.846
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN

NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.756 0.846
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD

HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.754 0.821
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN

NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.753 0.795
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG

CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.752 0.808
Rfx
M03959_2.00
Drosophila melanogaster
NGTHRCYATRGYDACN

NGTHRCYATRGYDACN
SELEX
Nitta et al.(2015)
Rfx_1
0.749 0.808
Rfx
M03960_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_2
0.749 0.808
Rfx
M03961_2.00
Drosophila melanogaster
BGTWRCCATGGYWACV

BGTWRCCATGGYWACV
SELEX
Nitta et al.(2015)
Rfx_3
0.749 0.808
Rfx
M03962_2.00
Drosophila melanogaster
GTTRCYAWTRGYAAC

GTTRCYAWTRGYAAC
SELEX
Nitta et al.(2015)
Rfx_4
0.749 0.808
Rfx
M03963_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_5
0.749 0.808
PHUM046580
M02454_2.00
Pediculus humanus
NGTHDCYANV

BNTRGHDACN
PBM
Weirauch et al.(2014)
pTH9278
0.740 0.833
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.731 0.705
RFX4
M02448_2.00
Cavia porcellus
GTHDYYNNGN

NCNNRRHDAC
PBM
Weirauch et al.(2014)
pTH9249
0.703 0.641
Rfx4
M00186_2.00
Mus musculus
GTHDYYNNSN

NSNNRRHDAC
PBM
Badis et al.(2009)
Rfx4_3761
0.703 0.641
RFX4
M03456_2.00
Homo sapiens
NGTWRYCATRGHWACN

NGTWDCYATGRYWACN
SELEX
Jolma et al.(2013)
RFX4_1
0.703 0.641
RFX4
M03457_2.00
Homo sapiens
NGTTGCYRRGCAACS

SGTTGCYYRGCAACN
SELEX
Jolma et al.(2013)
RFX4_2
0.703 0.641
RFX4
M05721_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX
0.703 0.641
RFX4
M05722_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX
0.703 0.641
Rfx6
M09365_2.00
Mus musculus
BDGTWKCYNDG

CHNRGMAACHV
Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C
0.683 0.615
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN

NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.654 0.436
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.654 0.436
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM

KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.654 0.436
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.654 0.436
RFX1
M11251_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.654 0.436
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000004334 RFX 192 269
ENSOCUP00000026604 RFX 192 269

Links

Other RFX family TFs
Other Oryctolagus cuniculus TFs

696 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000006857 Ailuropoda melanoleuca ENSAMEG00000006857 N 0.000
ENSAMXG00000010244 Astyanax mexicanus ENSAMXG00000010244 N 0.000
ENSAMXG00000018187 Astyanax mexicanus ENSAMXG00000018187 N 0.000
ENSAPLG00000011121 Anas platyrhynchos ENSAPLG00000011121 N 0.000
L3MBTL4 Canis familiaris ENSCAFG00000018588 N 0.000
L3MBTL4 Choloepus hoffmanni ENSCHOG00000003637 N 0.000
L3MBTL4 Callithrix jacchus ENSCJAG00000015716 N 0.000
ENSCSAG00000017582 Chlorocebus sabaeus ENSCSAG00000017582 N 0.000
l3mbtl3 Danio rerio ENSDARG00000025983 N 0.000
L3MBTL4 Danio rerio ENSDARG00000094780 N 0.000
L3MBTL4 Dasypus novemcinctus ENSDNOG00000006559 N 0.000
L3mbtl4 Dipodomys ordii ENSDORG00000013048 N 0.000
L3MBTL4 Erinaceus europaeus ENSEEUG00000009625 N 0.000
ENSFALG00000011622 Ficedula albicollis ENSFALG00000011622 N 0.000
L3MBTL4 Felis catus ENSFCAG00000031842 N 0.000
L3MBTL4 Homo sapiens ENSG00000154655 N 0.000
L3MBTL4 Gasterosteus aculeatus ENSGACG00000001138 N 0.000
L3MBTL4 Gorilla gorilla ENSGGOG00000015056 N 0.000
ENSGMOG00000012699 Gadus morhua ENSGMOG00000012699 N 0.000
ENSLACG00000022431 Latimeria chalumnae ENSLACG00000022431 N 0.000
ENSLOCG00000003008 Lepisosteus oculatus ENSLOCG00000003008 N 0.000
ENSLOCG00000017277 Lepisosteus oculatus ENSLOCG00000017277 N 0.000
ENSMEUG00000009268 Macropus eugenii ENSMEUG00000009268 N 0.000
L3MBTL4 Microcebus murinus ENSMICG00000015626 N 0.000
L3MBTL4 Myotis lucifugus ENSMLUG00000002011 N 0.000
L3MBTL4 Macaca mulatta ENSMMUG00000016302 N 0.000
L3MBTL4 Monodelphis domestica ENSMODG00000021457 N 0.000
ENSMPUG00000004964 Mustela putorius furo ENSMPUG00000004964 N 0.000
L3mbtl4 Mus musculus ENSMUSG00000041565 N 0.000
ENSNLEG00000006925 Nomascus leucogenys ENSNLEG00000006925 N 0.000
L3MBTL4 Oryctolagus cuniculus ENSOCUG00000013013 N 0.000
L3MBTL4 Otolemur garnettii ENSOGAG00000006203 N 0.000
ENSONIG00000015120 Oreochromis niloticus ENSONIG00000015120 N 0.000
ENSP00000382976 Macaca fascicularis ENSP00000382976 N 0.000
ENSPANG00000008894 Papio anubis ENSPANG00000008894 N 0.000
ENSPFOG00000009224 Poecilia formosa ENSPFOG00000009224 N 0.000
ENSPMAG00000002300 Petromyzon marinus ENSPMAG00000002300 N 0.000
ENSPPYG00000009022 Pongo abelii ENSPPYG00000009022 N 0.000
L3MBTL4 Pan troglodytes ENSPTRG00000009845 N 0.000
L3MBTL4 Pteropus vampyrus ENSPVAG00000002970 N 0.000
L3mbtl4 Rattus norvegicus ENSRNOG00000025273 N 0.000
L3MBTL4 Sorex araneus ENSSARG00000006794 N 0.000
ENSSHAG00000012679 Sarcophilus harrisii ENSSHAG00000012679 N 0.000
L3MBTL3 Taeniopygia guttata ENSTGUG00000011709 N 0.000
L3MBTL4 Tetraodon nigroviridis ENSTNIG00000004386 N 0.000
L3MBTL4 Takifugu rubripes ENSTRUG00000001294 N 0.000
ENSTSYG00000003474 Tarsius syrichta ENSTSYG00000003474 N 0.000
L3MBTL4 Tursiops truncatus ENSTTRG00000012966 N 0.000
ENSXMAG00000014347 Xiphophorus maculatus ENSXMAG00000014347 N 0.000
Gfo_R016211 Geospiza fortis Gfo_R016211 N 0.000
LotgiG216594 Lottia gigantea LotgiG216594 N 0.000
Myotis_brandtii_L3MBTL4_10019905 Myotis brandtii Myotis_brandtii_L3MBTL4_10019905 N 0.000
NEMVEDRAFT_v1g187589 Nematostella vectensis NEMVEDRAFT_v1g187589 N 0.000
NEMVEDRAFT_v1g20650 Nematostella vectensis NEMVEDRAFT_v1g20650 N 0.000
Sakowv30043999m.g Saccoglossus kowalevskii Sakowv30043999m.g N 0.000
XP_002170161.1 Hydra magnipapillata XP_002170161.1 N 0.000