CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGTG_11391
(
Puccinia graminis
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02257 (RFX_DNA_binding)
IPR003150
PGTG_11391
T318739_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RFX4
M02448_2.00
Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC
PBM
Weirauch et al.(2014)
pTH9249
0.656
0.443
Rfx4
M00186_2.00
Mus musculus
GTHDYYNNSN
NSNNRRHDAC
PBM
Badis et al.(2009)
Rfx4_3761
0.656
0.443
RFX4
M03456_2.00
Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN
SELEX
Jolma et al.(2013)
RFX4_1
0.656
0.443
RFX4
M03457_2.00
Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN
SELEX
Jolma et al.(2013)
RFX4_2
0.656
0.443
RFX4
M05721_2.00
Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX
0.656
0.443
RFX4
M05722_2.00
Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX
0.656
0.443
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.653
0.456
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.652
0.430
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.652
0.430
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.652
0.430
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.652
0.430
RFX1
M11251_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.652
0.430
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.652
0.430
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.652
0.430
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.652
0.430
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.652
0.430
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.652
0.430
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.652
0.430
RFX1
M11245_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.652
0.430
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.652
0.430
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.652
0.430
RFX1
M11248_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.652
0.430
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.652
0.430
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG
CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.652
0.456
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.652
0.456
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN
NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.651
0.456
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.651
0.456
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.651
0.456
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG
CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.651
0.430
Rfx
M03959_2.00
Drosophila melanogaster
NGTHRCYATRGYDACN
NGTHRCYATRGYDACN
SELEX
Nitta et al.(2015)
Rfx_1
0.651
0.418
Rfx
M03960_2.00
Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_2
0.651
0.418
Rfx
M03961_2.00
Drosophila melanogaster
BGTWRCCATGGYWACV
BGTWRCCATGGYWACV
SELEX
Nitta et al.(2015)
Rfx_3
0.651
0.418
Rfx
M03962_2.00
Drosophila melanogaster
GTTRCYAWTRGYAAC
GTTRCYAWTRGYAAC
SELEX
Nitta et al.(2015)
Rfx_4
0.651
0.418
Rfx
M03963_2.00
Drosophila melanogaster
GTTGCTARGCAAC
GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_5
0.651
0.418
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN
NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.651
0.443
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD
HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.651
0.430
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFP85222
RFX
425
503
QAFVQAWLNSSYISYTDGNVSRQGLYGSYLRICQQYDIKPINSASFGKSVRQSFPNIKTRRLGVRGNSKYHYCGIRPAT
Links
Other
RFX
family TFs
Other
Puccinia graminis
TFs
327 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy