Ogr13052 (Ophisaurus gracilis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Ogr13052 T319012_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX5
M03458_2.00
Homo sapiens
BGTTRCYATRGYAACV

BGTTRCYATRGYAACV
SELEX
Jolma et al.(2013)
RFX5_1
0.737 0.730
RFX5
M03459_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_2
0.737 0.730
RFX5
M03460_2.00
Homo sapiens
BGTTGCYATGGYAACV

BGTTRCCATRGCAACV
SELEX
Jolma et al.(2013)
RFX5_3
0.737 0.730
RFX5
M05725_2.00
Homo sapiens
BGTTRCYANGBGTTGCYRN

NYRGCAACVCNTRGYAACV
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1
0.737 0.730
RFX5
M05726_2.00
Homo sapiens
NYRVYAACSGTTRCYAN

NTRGYAACSGTTRBYRN
SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2
0.737 0.730
RFX5
M08009_2.00
Homo sapiens
KCRBYDGTTRCYRRG

CYYRGYAACHRVYGM
ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford
0.737 0.730
RFX5
M08010_2.00
Homo sapiens
DBVBYDGTTGCYRGGBVRR

YYBVCCYRGCAACHRVBVH
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford
0.737 0.730
RFX5
M08011_2.00
Homo sapiens
TCVBYDGTTDCYRDG

CHYRGHAACHRVBGA
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford
0.737 0.730
RFX5
M08012_2.00
Homo sapiens
YDGTTRCYRKGBVRV

BYBVCMYRGYAACHR
ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford
0.737 0.730
RFX5
M09364_2.00
Homo sapiens
VNNVBYDGTTGCYRKGNVRV

BYBNCMYRGCAACHRVBNNB
Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A
0.737 0.730
RFX5
M09629_2.00
Homo sapiens
NDGTTRCYADGV

BCHTRGYAACHN
Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477
0.737 0.730
RFX5
M11249_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_03
0.737 0.730
RFX5
M11250_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX5_05
0.737 0.730
RFX5
M05727_2.00
Homo sapiens
BGTYRYYRNGBGTTGYYRN

NYRRCAACVCNYRRYRACV
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1
0.737 0.730
RFX5
M05728_2.00
Homo sapiens
NTRGYAASSGTYRBYRN

NYRVYRACSSTTRCYAN
SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2
0.737 0.730
Rfx7
M00823_2.00
Mus musculus
GTYRCYRNSB

VSNYRGYRAC
PBM
Weirauch et al.(2013)
pTH3516
0.699 0.649
Rfx7
M00187_2.00
Mus musculus
BGTHDYYRNN

NNYRRHDACV
PBM
Badis et al.(2009)
Rfxdc2_3516
0.699 0.649
RFX7
M05729_2.00
Homo sapiens
BGTTRCYRY

RYRGYAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX
0.699 0.649
RFX7
M05730_2.00
Homo sapiens
BGTTGCYRB

VYRGCAACV
SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX
0.699 0.649
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr13052 RFX 92 166

Links

Other RFX family TFs
Other Ophisaurus gracilis TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL013752 Aedes aegypti AAEL013752 I 0.665
AALB008384 Anopheles albimanus AALB008384 I 0.667
Aan_R010941 Calypte anna Aan_R010941 I 0.763
Aan_R011989 Calypte anna Aan_R011989 I 0.699
AARA004226 Anopheles arabiensis AARA004226 I 0.667
AATE016751 Anopheles atroparvus AATE016751 I 0.667
ACEP24602 Atta cephalotes ACEP24602 I 0.675
ACHR008891 Anopheles christyi ACHR008891 I 0.667
ACOM036649 Anopheles coluzzii ACOM036649 I 0.667
ACUA017169 Anopheles culicifacies ACUA017169 I 0.667
ADAC008404 Anopheles darlingi ADAC008404 I 0.667
ADIR010232 Anopheles dirus ADIR010232 I 0.667
AEPI006624 Anopheles epiroticus AEPI006624 I 0.667
AFAF011654 Anopheles farauti AFAF011654 I 0.668
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.767
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.699
AFUN011072 Anopheles funestus AFUN011072 I 0.667
AGAP013226 Anopheles gambiae AGAP013226 I 0.667
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.699
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.771
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.657
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.657
AMEC002251 Anopheles melas AMEC002251 I 0.667
AMEM009524 Anopheles merus AMEM009524 I 0.667
AMIN003942 Anopheles minimus AMIN003942 I 0.667
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.667
ASIS020285 Anopheles sinensis ASIS020285 I 0.667
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.667
A_01977 Schistosoma haematobium A_01977 I 0.684
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.666
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.699
CapteG131555 Capitella teleta CapteG131555 I 0.684
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.668
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.667
CGI_10016120 Crassostrea gigas CGI_10016120 I 0.653
CLEC011984 Cimex lectularius CLEC011984 I 0.663
CLUG_05348 Clavispora lusitaniae CLUG_05348 I 0.653
CLUG_05348 Candida lusitaniae CLUG_05348 I 0.653
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.696
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.656
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.664
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.664
csin102559 Clonorchis sinensis csin102559 I 0.690
D915_00887 Fasciola hepatica D915_00887 I 0.653
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.673
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.680
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.653
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.680
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.698
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.779
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.748
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.699
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.741
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.702
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.703
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.694
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.699
RFX7 Bos taurus ENSBTAG00000000565 I 0.699
RFX5 Bos taurus ENSBTAG00000017580 I 0.737
RFX5 Canis familiaris ENSCAFG00000012661 I 0.737
RFX7 Canis familiaris ENSCAFG00000016029 I 0.699
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.699
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.733
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.737
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.699
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.737
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.737
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.699
rfx5 Danio rerio ENSDARG00000063258 I 0.743
rfx7 Danio rerio ENSDARG00000077237 I 0.698
RFX7 Danio rerio ENSDARG00000103691 I 0.702
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.663
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.699
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.737
RFX7 Equus caballus ENSECAG00000002379 I 0.698
RFX5 Equus caballus ENSECAG00000024774 I 0.737
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.726
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.698
RFX5 Echinops telfairi ENSETEG00000013503 I 0.737
RFX7 Echinops telfairi ENSETEG00000015037 I 0.683
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.765
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.699
RFX5 Felis catus ENSFCAG00000005568 I 0.737
RFX7 Felis catus ENSFCAG00000029408 I 0.699
RFX5 Homo sapiens ENSG00000143390 D 0.737
RFX7 Homo sapiens ENSG00000181827 D 0.700
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.702
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.705
RFX5 Gallus gallus ENSGALG00000000836 I 0.766
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.737
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.693
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.702
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.699
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.699
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.737
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.740
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.703
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.659
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.738
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.762
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.699
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.748
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.697
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.737
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.704
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.704
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.699
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.671
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.699
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.737
Rfx5 Mus musculus ENSMUSG00000005774 I 0.737
Rfx7 Mus musculus ENSMUSG00000037674 D 0.699
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.699
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.737
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.699
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.699
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.737
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.737
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.699
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.737
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.699
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.744
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.703
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.702
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.660
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.739
RFX7 Oryzias latipes ENSORLG00000005342 I 0.702
rfx7 Oryzias latipes ENSORLG00000008583 I 0.699
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.737
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.737
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.698
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.737
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.699
RFX7 Procavia capensis ENSPCAG00000004974 I 0.699
RFX5 Procavia capensis ENSPCAG00000011056 I 0.754
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.698
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.743
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.695
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.737
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.699
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.699
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.769
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.737
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.699
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.697
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.737
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.737
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.699
RFX5 Sorex araneus ENSSARG00000000750 I 0.737
RFX7 Sorex araneus ENSSARG00000010801 I 0.704
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.699
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.738
RFX5 Sus scrofa ENSSSCG00000006625 I 0.737
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.661
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.739
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.737
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.699
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.743
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.694
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.697
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.743
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.697
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.700
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.699
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.671
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.737
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.696
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.699
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.695
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.702
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.743
estExt_genewise1_worm.C_chr_6.10133 Pichia stipitis estExt_genewise1_worm.C_chr_6.10133 I 0.652
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.685
CG9727 Drosophila melanogaster FBgn0037445 I 0.665
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.665
GF16654 Drosophila ananassae FBgn0093675 I 0.665
GG10435 Drosophila erecta FBgn0102744 I 0.665
GH18082 Drosophila grimshawi FBgn0125550 I 0.664
GI24583 Drosophila mojavensis FBgn0147305 I 0.665
GL22063 Drosophila persimilis FBgn0159655 I 0.665
GM10553 Drosophila sechellia FBgn0165499 I 0.665
GD19544 Drosophila simulans FBgn0191039 I 0.665
GJ22650 Drosophila virilis FBgn0209754 I 0.665
GK13786 Drosophila willistoni FBgn0215794 I 0.665
GE24099 Drosophila yakuba FBgn0241238 I 0.665
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.652
GB49419 Apis mellifera GB49419 I 0.675
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.765
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.699
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.684
HMEL011744 Heliconius melpomene HMEL011744 I 0.667
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.684
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.682
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.675
ISCW001129 Ixodes scapularis ISCW001129 I 0.652
KGM_16732 Danaus plexippus KGM_16732 I 0.666
L798_03377 Zootermopsis nevadensis L798_03377 I 0.673
LCUP014592 Lucilia cuprina LCUP014592 I 0.670
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.681
LotgiG138119 Lottia gigantea LotgiG138119 I 0.670
MCINX003210 Melitaea cinxia MCINX003210 I 0.667
MDOA009335 Musca domestica MDOA009335 I 0.670
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.748
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.702
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.682
NV23037 Nasonia vitripennis NV23037 I 0.672
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.690
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.661
PHUM035280 Pediculus humanus PHUM035280 I 0.676
PICST_78645 Scheffersomyces stipitis PICST_78645 I 0.650
PNEG_02893 Pneumocystis murina PNEG_02893 I 0.652
PredSwiss_ASS2010_3110.1 Pneumocystis carinii PredSwiss_ASS2010_3110.1 I 0.652
PredSwiss_CON653.4 Pneumocystis carinii PredSwiss_CON653.4 I 0.652
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.780
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.697
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.654
SINV24627 Solenopsis invicta SINV24627 I 0.675
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.685
Smp_040350 Schistosoma mansoni Smp_040350 I 0.684
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.692
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.651
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.692
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.685
T265_11740 Opisthorchis viverrini T265_11740 I 0.690
TC008959 Tribolium castaneum TC008959 I 0.671
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.654
TsM_000553100 Taenia solium TsM_000553100 I 0.680
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.680
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.697
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.767
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.767
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.669