Cla019404 (Citrullus lanatus)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Cla019404 T320918_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN

NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.816 0.816
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC

GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla019404 RWP-RK 150 198

Links

Other RWP-RK family TFs
Other Citrullus lanatus TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGOS_AEL245W Ashbya gossypii AGOS_AEL245W I 0.000
CAGL0H05379g Candida glabrata CAGL0H05379g I 0.000
Ecym_7037 Eremothecium cymbalariae Ecym_7037 I 0.000
KAFR_0E00910 Kazachstania africana KAFR_0E00910 I 0.000
KLLA0_E23431g Kluyveromyces lactis KLLA0_E23431g I 0.000
KLTH0E12584g Kluyveromyces thermotolerans KLTH0E12584g I 0.000
Kwal_12044 Kluyveromyces waltii Kwal_12044 I 0.000
SAKL0H10010g Lachancea kluyveri SAKL0H10010g I 0.000
LALA0_S04e03466g Lachancea lanzarotensis LALA0_S04e03466g I 0.000
KLTH0E12584g Lachancea thermotolerans KLTH0E12584g I 0.000
NCAS_0C02090 Naumovozyma castellii NCAS_0C02090 I 0.000
NDAI_0E02800 Naumovozyma dairenensis NDAI_0E02800 I 0.000
Scas_Contig664.15 Saccharomyces castellii Scas_Contig664.15 I 0.000
GCR1 Saccharomyces cerevisiae YPL075W D 0.000
SKUD_192107 Saccharomyces kudriavzevii SKUD_192107 I 0.000
22012_YPL075W Saccharomyces mikatae 22012_YPL075W I 0.000
22618_YPL075W Saccharomyces paradoxus 22618_YPL075W I 0.000
AACERI_AaceriAEL245W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL245W I 0.000
TBLA_0B04590 Tetrapisispora blattae TBLA_0B04590 I 0.000
TPHA_0I01890 Tetrapisispora phaffii TPHA_0I01890 I 0.000
TDEL_0B03030 Torulaspora delbrueckii TDEL_0B03030 I 0.000
Kpol_1048p60 Vanderwaltozyma polyspora Kpol_1048p60 I 0.000
ZBAI_07289 Zygosaccharomyces bailii ZBAI_07289 I 0.000
ZBAI_01205 Zygosaccharomyces bailii ZBAI_01205 I 0.000
ZYRO0D03916g Zygosaccharomyces rouxii ZYRO0D03916g I 0.000