Lus10019100.g (Linum usitatissimum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Lus10019100.g T321176_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.735 0.735
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.735 0.735
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10019100 RWP-RK 115 163

Links

Other RWP-RK family TFs
Other Linum usitatissimum TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.980
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.822
Genemark1.7281_g Coccomyxa subellipsoidea C169 Genemark1.7281_g I 0.808
MTR_0140s0010 Medicago truncatula MTR_0140s0010 I 0.800
30138.m004071 Ricinus communis 30138.m004071 I 0.796
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.796
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.796
mgf022310m Mimulus guttatus mgf022310m I 0.776
mg020279m Mimulus guttatus mg020279m I 0.776
Pm024905 Prunus mume Pm024905 I 0.776
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.776
Cla019404 Citrullus lanatus Cla019404 I 0.776
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.776
MDP0000266172 Malus domestica MDP0000266172 I 0.776
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.755
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.755
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.755
MDP0000261199 Malus domestica MDP0000261199 I 0.755
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.755
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.755
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.755
Lus10035008.g Linum usitatissimum Lus10035008.g I 0.755
TCM_014009 Theobroma cacao TCM_014009 I 0.755
LPERR01G16660 Leersia perrieri LPERR01G16660 N 0.755
ONIVA01G21910 Oryza nivara ONIVA01G21910 N 0.755
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.755
OPUNC01G19590 Oryza punctata OPUNC01G19590 N 0.755
OBART01G19230 Oryza barthii OBART01G19230 N 0.755
ORUFI01G21630 Oryza rufipogon ORUFI01G21630 N 0.755
BGIOSGA001434 Oryza indica BGIOSGA001434 N 0.755
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.735
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.735
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.735
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.735
RKD2 Arabidopsis thaliana AT1G74480 D 0.735
RKD3 Arabidopsis thaliana AT5G66990 N 0.735
Bra015907 Brassica rapa Bra015907 I 0.735
F775_03178 Aegilops tauschii F775_03178 N 0.735
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.735
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.735
Ca_13151 Cicer arietinum Ca_13151 I 0.735
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.735
RKD1 Arabidopsis thaliana AT1G18790 I 0.735
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.735
OGLUM01G22860 Oryza glumaepatula OGLUM01G22860 N 0.735
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.735
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.735
Si005102m.g Setaria italica Si005102m.g N 0.714
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.714
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.714
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.714
Sb03g025130 Sorghum bicolor Sb03g025130 N 0.714
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.714
BRADI2G40920 Brachypodium distachyon BRADI2G40920 N 0.714
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.714
GRMZM2G071322 Zea mays GRMZM2G071322 N 0.714
Si008273m.g Setaria italica Si008273m.g I 0.714
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.714
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.714
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.703
LjSGA_030914.1 Lotus japonicus LjSGA_030914.1 N 0.700