CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Aa00708
(
Panicum virgatum
)
RWP-RK
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02042 (RWP-RK)
IPR003035
Pavir.Aa00708
T321211_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RKD2
M07249_2.00
Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN
Dap-seq
OMalley et al.(2016)
RKD2_col_a
0.714
0.714
RKD2
M07250_2.00
Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC
Dap-seq
OMalley et al.(2016)
RKD2_colamp_a
0.714
0.714
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Aa00708.1.p
RWP-RK
177
225
GLTFELVSRYLSMPIKQAARELNVGLTVLKKRCRELGIPRWPHRKVKSL
Pavir.Aa00708.2.p
RWP-RK
174
222
GLTFELVSRYLSMPIKQAARELNVGLTVLKKRCRELGIPRWPHRKVKSL
Links
Other
RWP-RK
family TFs
Other
Panicum virgatum
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy