29805.m001471 (Ricinus communis)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 29805.m001471 T321465_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
S1FA3
M07252_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT3G09735_col_a
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29805.m001471 S1FA 24 89

Links

Other S1FA family TFs
Other Ricinus communis TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.742
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.773
Bo00703s130 Brassica oleracea Bo00703s130 I 0.712
Bo00703s150 Brassica oleracea Bo00703s150 I 0.712
Bo5g138130 Brassica oleracea Bo5g138130 I 0.712
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.758
Bra029784 Brassica rapa Bra029784 I 0.727
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.712
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.727
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.727
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.727
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.727
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.758
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.848
Ca_12027 Cicer arietinum Ca_12027 I 0.803
Ca_12028 Cicer arietinum Ca_12028 I 0.803
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.788
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.848
Cla018106 Citrullus lanatus Cla018106 I 0.818
Cla018556 Citrullus lanatus Cla018556 I 0.818
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.833
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.803
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.773
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.833
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.742
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.703
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.773
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.848
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.803
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.773
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.833
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.833
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.803
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.818
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.714
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.788
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.712
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.773
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.742
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.864
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.864
MDP0000559232 Malus domestica MDP0000559232 N 0.732
mgf000337m Mimulus guttatus mgf000337m I 0.818
mgf004062m Mimulus guttatus mgf004062m I 0.803
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.712
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.773
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.773
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.803
OB04G18770 Oryza brachyantha OB04G18770 I 0.712
OB04G18780 Oryza brachyantha OB04G18780 I 0.712
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.848
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.712
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.879
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.894
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.879
PK08477.1 Cannabis sativa PK08477.1 I 0.727
Pm002519 Prunus mume Pm002519 N 0.742
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.848
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.818
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.742
S1FA1 Arabidopsis thaliana AT3G53370 I 0.742
S1FA2 Arabidopsis thaliana AT2G37120 I 0.758
S1FA3 Arabidopsis thaliana AT3G09735 D 0.727
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.848
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.879
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.773
Si011030m.g Setaria italica Si011030m.g N 0.712
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.864
TCM_022113 Theobroma cacao TCM_022113 I 0.773
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.727
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.758
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.727
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.712
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.712
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.712
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.773
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.788