Bo9g137270 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo9g137270 T322454_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.939 0.893
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.939 0.893
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.939 0.893
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.928 0.707
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.928 0.707
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.928 0.707
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.922 0.787
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.921 0.707
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.921 0.707
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.921 0.707
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.918 0.680
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.918 0.693
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.913 0.680
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.911 0.680
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.910 0.600
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.906 0.733
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.903 0.707
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.887 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g137270.1 SBP 61 135

Links

Other SBP family TFs
Other Brassica oleracea TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo1g129690 Brassica oleracea Bo1g129690 I 0.982
Bra021094 Brassica rapa Bra021094 I 0.982
Bo5g127310 Brassica oleracea Bo5g127310 I 0.960
Bra027265 Brassica rapa Bra027265 I 0.960
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.958
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.956
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.943
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.943
SPL5 Arabidopsis thaliana AT3G15270 D 0.939
Bo6g031220 Brassica oleracea Bo6g031220 I 0.936
Bra039656 Brassica rapa Bra039656 I 0.936
Bra038101 Brassica rapa Bra038101 I 0.932
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I 0.928
SPL14 Arabidopsis thaliana AT1G20980 D 0.928
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I 0.928
Carubv10008169m.g Capsella rubella Carubv10008169m.g I 0.928
Carubv10012577m.g Capsella rubella Carubv10012577m.g I 0.928
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.927
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.927
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.927
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.926
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.926
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I 0.925
MTR_2g046550 Medicago truncatula MTR_2g046550 I 0.925
GLYMA07G36180 Glycine max GLYMA07G36180 I 0.925
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I 0.925
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.925
Ca_18591 Cicer arietinum Ca_18591 I 0.925
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.923
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.922
Bra015732 Brassica rapa Bra015732 I 0.922
Bo6g120690 Brassica oleracea Bo6g120690 I 0.922
SPL4 Arabidopsis thaliana AT1G53160 D 0.922
Bra025863 Brassica rapa Bra025863 I 0.922
Bo2g091010 Brassica oleracea Bo2g091010 I 0.921
SPL1 Arabidopsis thaliana AT2G47070 D 0.921
SapurV1A.0016s0070 Salix purpurea SapurV1A.0016s0070 I 0.921
POPTR_0005s28010 Populus trichocarpa POPTR_0005s28010 I 0.921
Bostr.20129s0096 Boechera stricta Bostr.20129s0096 I 0.921
28211.m000132 Ricinus communis 28211.m000132 I 0.921
TCM_034803 Theobroma cacao TCM_034803 I 0.921
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.920
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.920
Ca_01036 Cicer arietinum Ca_01036 I 0.920
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.919
Bo5g030930 Brassica oleracea Bo5g030930 I 0.919
TCM_008671 Theobroma cacao TCM_008671 I 0.919
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.918
POPTR_0002s00440 Populus trichocarpa POPTR_0002s00440 D 0.918
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.918
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.918
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.918
SPL12 Arabidopsis thaliana AT3G60030 D 0.918
Gorai.002G068300 Gossypium raimondii Gorai.002G068300 I 0.916
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.915
TCM_031595 Theobroma cacao TCM_031595 I 0.915
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.915
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.915
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.914
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.914
Pm022881 Prunus mume Pm022881 I 0.913
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I 0.913
PRUPE_ppa000682mg Prunus persica PRUPE_ppa000682mg D 0.913
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.912
SapurV1A.0554s0130 Salix purpurea SapurV1A.0554s0130 I 0.912
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.912
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.912
SELMODRAFT_28595 Selaginella moellendorffii SELMODRAFT_28595 I 0.912
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.912
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.912
SPL6 Oryza sativa OS03G0833300 I 0.912
Bo6g029290 Brassica oleracea Bo6g029290 I 0.912
SELMODRAFT_28598 Selaginella moellendorffii SELMODRAFT_28598 I 0.912
OBART03G39900 Oryza barthii OBART03G39900 I 0.912
Bo9g097630 Brassica oleracea Bo9g097630 I 0.912
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.912
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.912
Si031154m.g Setaria italica Si031154m.g I 0.912
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.912
OB03G47050 Oryza brachyantha OB03G47050 I 0.912
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.911
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I 0.911
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.911
AT1G76580 Arabidopsis thaliana AT1G76580 D 0.911
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.911
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.911
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.910
SPL13A Arabidopsis thaliana AT5G50570 I 0.910
SPL13A Arabidopsis thaliana AT5G50670 D 0.910
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.910
Bo3g024180 Brassica oleracea Bo3g024180 I 0.910
Cagra.1472s0017 Capsella grandiflora Cagra.1472s0017 I 0.909
Carubv10010422m.g Capsella rubella Carubv10010422m.g I 0.909
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.909
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.908
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.908
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.908
Cla002263 Citrullus lanatus Cla002263 I 0.907
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.907
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.907
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.906
MDP0000149339 Malus domestica MDP0000149339 I 0.906
PK22320.1 Cannabis sativa PK22320.1 D 0.906
F775_31139 Aegilops tauschii F775_31139 I 0.905
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.905
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.905
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.905
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.905
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.905
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.905
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.905
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.905
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.905
Si034095m.g Setaria italica Si034095m.g I 0.904
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.904
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.904
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.904
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.904
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.904
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.904
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.904
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.904
OB08G27190 Oryza brachyantha OB08G27190 I 0.904
29889.m003388 Ricinus communis 29889.m003388 I 0.904
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.903
30076.m004574 Ricinus communis 30076.m004574 I 0.903
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.903
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.903
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.903
MDP0000919693 Malus domestica MDP0000919693 I 0.903
PK06791.1 Cannabis sativa PK06791.1 D 0.903
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.903
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.903
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.903
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.903
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.903
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.903
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.903
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.903
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.903
Ca_03548 Cicer arietinum Ca_03548 I 0.903
Bra041037 Brassica rapa Bra041037 I 0.903
F775_27970 Aegilops tauschii F775_27970 I 0.903
Bo4g005730 Brassica oleracea Bo4g005730 I 0.903
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.903
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.903
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.903
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.903
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.903
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.902
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.902
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.902
TCM_004922 Theobroma cacao TCM_004922 I 0.902
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.902
TCM_021482 Theobroma cacao TCM_021482 I 0.901
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.901
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.901
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.901
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.901
MDP0000180408 Malus domestica MDP0000180408 I 0.901
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.901
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.901
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.901
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.900
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.900
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.900
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.900
Pavir.Bb02800 Panicum virgatum Pavir.Bb02800 N 0.900
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.900
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.900
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.900
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.899
OBART08G20320 Oryza barthii OBART08G20320 I 0.899
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.899
MDP0000180409 Malus domestica MDP0000180409 I 0.899
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.899
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.899
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.899
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.899
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.899
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.899
SPL15 Oryza indica BGIOSGA028994 I 0.899
MDP0000919694 Malus domestica MDP0000919694 I 0.899
Pm008474 Prunus mume Pm008474 I 0.899
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.899
Pm008475 Prunus mume Pm008475 I 0.899
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.898
mgf009459m Mimulus guttatus mgf009459m I 0.898
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.898
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.897
PK02140.1 Cannabis sativa PK02140.1 I 0.897
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.896
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.896
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.896
Bra022766 Brassica rapa Bra022766 I 0.896
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.896
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.896
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.896
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.896
Cla017596 Citrullus lanatus Cla017596 I 0.896
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.896
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.896
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.896
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.896
Ca_05711 Cicer arietinum Ca_05711 I 0.896
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.896
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.895
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.895
gw1.47.180.1 Physcomitrella patens gw1.47.180.1 I 0.895
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.895
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.894
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.893
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.893
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.893
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.892
Cla002666 Citrullus lanatus Cla002666 I 0.892
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.892
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.892
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.892
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.892
Pm024528 Prunus mume Pm024528 I 0.892
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.891
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.891
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.891
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.891
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.890
Bo4g042390 Brassica oleracea Bo4g042390 I 0.888
Bra005470 Brassica rapa Bra005470 I 0.888
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.887
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.887
Pm017778 Prunus mume Pm017778 I 0.886
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.886
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.886
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.886
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.886
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.886
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.886