Sb01g002530 (Sorghum bicolor)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Sb01g002530 T322991_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.979 0.867
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.974 0.827
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.974 0.827
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.974 0.827
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.968 0.747
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.967 0.787
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.962 0.800
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.962 0.800
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.962 0.800
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.961 0.773
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.957 0.787
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.956 0.773
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.944 0.733
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.940 0.720
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.937 0.720
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.937 0.720
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.937 0.720
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.931 0.693
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.931 0.693
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.931 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb01g002530.1 SBP 152 226

Links

Other SBP family TFs
Other Sorghum bicolor TFs

497 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Afo_R001981 Aptenodytes forsteri Afo_R001981 I 0.000
Alligator_sinensis_CCG003696.1 Alligator sinensis Alligator_sinensis_CCG003696.1 I 0.000
Alligator_sinensis_CCG004564.1 Alligator sinensis Alligator_sinensis_CCG004564.1 I 0.000
Alligator_sinensis_CCG015719.1 Alligator sinensis Alligator_sinensis_CCG015719.1 I 0.000
Cmyd_10002838 Chelonia mydas Cmyd_10002838 I 0.000
ENSAMEG00000005109 Ailuropoda melanoleuca ENSAMEG00000005109 I 0.000
ENSAPLG00000006203 Anas platyrhynchos ENSAPLG00000006203 I 0.000
ENSAPLG00000009319 Anas platyrhynchos ENSAPLG00000009319 I 0.000
IRF5 Bos taurus ENSBTAG00000004989 I 0.000
IRF5 Canis familiaris ENSCAFG00000001611 I 0.000
IRF5 Callithrix jacchus ENSCJAG00000018061 I 0.000
IRF5 Cavia porcellus ENSCPOG00000000246 I 0.000
ENSCSAG00000009970 Chlorocebus sabaeus ENSCSAG00000009970 I 0.000
irf5 Danio rerio ENSDARG00000045681 I 0.000
IRF5 Dasypus novemcinctus ENSDNOG00000013370 I 0.000
Irf5 Dipodomys ordii ENSDORG00000010627 I 0.000
IRF5 Equus caballus ENSECAG00000009902 I 0.000
IRF5 Echinops telfairi ENSETEG00000002100 I 0.000
ENSFALG00000000504 Ficedula albicollis ENSFALG00000000504 I 0.000
IRF5 Felis catus ENSFCAG00000000956 I 0.000
IRF5 Homo sapiens ENSG00000128604 D 0.000
irf5 Gasterosteus aculeatus ENSGACG00000000695 I 0.000
IRF6 Gallus gallus ENSGALG00000001405 D 0.000
IRF5 Gorilla gorilla ENSGGOG00000012013 I 0.000
ENSGMOG00000007264 Gadus morhua ENSGMOG00000007264 I 0.000
ENSLACG00000005750 Latimeria chalumnae ENSLACG00000005750 I 0.000
ENSLACG00000018600 Latimeria chalumnae ENSLACG00000018600 I 0.000
IRF5 Loxodonta africana ENSLAFG00000021568 I 0.000
ENSLOCG00000015563 Lepisosteus oculatus ENSLOCG00000015563 I 0.000
ENSMEUG00000002435 Macropus eugenii ENSMEUG00000002435 I 0.000
IRF6 Meleagris gallopavo ENSMGAG00000004431 D 0.000
IRF5 Microcebus murinus ENSMICG00000000138 I 0.000
IRF5 Myotis lucifugus ENSMLUG00000001406 I 0.000
IRF5 Macaca mulatta ENSMMUG00000018478 I 0.000
IRF5 Monodelphis domestica ENSMODG00000014710 I 0.000
ENSMPUG00000006034 Mustela putorius furo ENSMPUG00000006034 I 0.000
Irf5 Mus musculus ENSMUSG00000029771 D 0.000
ENSNLEG00000012454 Nomascus leucogenys ENSNLEG00000012454 I 0.000
IRF5 Ornithorhynchus anatinus ENSOANG00000011449 I 0.000
ENSOARG00000003908 Ovis aries ENSOARG00000003908 I 0.000
IRF5 Oryctolagus cuniculus ENSOCUG00000010101 D 0.000
IRF5 Otolemur garnettii ENSOGAG00000009608 I 0.000
ENSONIG00000007600 Oreochromis niloticus ENSONIG00000007600 I 0.000
IRF5 Ochotona princeps ENSOPRG00000006148 I 0.000
ENSP00000349770 Macaca fascicularis ENSP00000349770 I 0.000
ENSP00000349770-D1 Bos grunniens ENSP00000349770-D1 I 0.000
ENSPANG00000018384 Papio anubis ENSPANG00000018384 I 0.000
ENSPFOG00000013528 Poecilia formosa ENSPFOG00000013528 I 0.000
ENSPPYG00000017989 Pongo abelii ENSPPYG00000017989 I 0.000
ENSPSIG00000003597 Pelodiscus sinensis ENSPSIG00000003597 I 0.000
IRF5 Pan troglodytes ENSPTRG00000019675 I 0.000
IRF5 Pteropus vampyrus ENSPVAG00000015756 I 0.000
Irf5 Rattus norvegicus ENSRNOG00000007437 I 0.000
ENSSHAG00000006683 Sarcophilus harrisii ENSSHAG00000006683 I 0.000
IRF6 Sus scrofa ENSSSCG00000015612 I 0.000
IRF5 Sus scrofa ENSSSCG00000016573 I 0.000
ENSSTOG00000004858 Ictidomys tridecemlineatus ENSSTOG00000004858 I 0.000
IRF6 Taeniopygia guttata ENSTGUG00000001485 I 0.000
irf5 Tetraodon nigroviridis ENSTNIG00000003346 I 0.000
irf5 Takifugu rubripes ENSTRUG00000000641 I 0.000
ENSXMAG00000013056 Xiphophorus maculatus ENSXMAG00000013056 I 0.000
Myotis_brandtii_IRF5_10012830 Myotis brandtii Myotis_brandtii_IRF5_10012830 I 0.000
Pvit_14327 Pogona vitticeps Pvit_14327 I 0.000
Pvit_15428 Pogona vitticeps Pvit_15428 I 0.000
irf6.2.L Xenopus laevis XB-GENE-5910427 I 0.000
irf6.S Xenopus laevis XB-GENE-876421 I 0.000
irf5 Xenopus tropicalis XB-GENE-998624 I 0.000
irf5.L Xenopus laevis XB-GENE-998629 D 0.000