SELMODRAFT_28629 (Selaginella moellendorffii)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 SELMODRAFT_28629 T323024_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN

NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.953 0.824
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN

NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.948 0.811
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW

WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.925 0.838
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.909 0.743
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.909 0.743
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.909 0.743
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFJ35604 SBP 3 77

Links

Other SBP family TFs
Other Selaginella moellendorffii TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_31139 Aegilops tauschii F775_31139 I 0.889
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.926
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.889
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.935
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.925
SPL1 Arabidopsis thaliana AT2G47070 D 0.909
SPL8 Arabidopsis thaliana AT1G02065 D 0.925
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.925
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.890
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.930
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.921
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.937
Bo8g118210 Brassica oleracea Bo8g118210 I 0.925
Bo6g031220 Brassica oleracea Bo6g031220 I 0.893
Bo5g001290 Brassica oleracea Bo5g001290 I 0.925
Bra039656 Brassica rapa Bra039656 I 0.893
Bra033221 Brassica rapa Bra033221 I 0.925
Bra032662 Brassica rapa Bra032662 I 0.925
PK25779.1 Cannabis sativa PK25779.1 I 0.930
PK02140.1 Cannabis sativa PK02140.1 I 0.895
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.925
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.924
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.930
Ca_18942 Cicer arietinum Ca_18942 I 0.930
Ca_05711 Cicer arietinum Ca_05711 I 0.896
Cla006776 Citrullus lanatus Cla006776 I 0.927
Cla002666 Citrullus lanatus Cla002666 I 0.890
Cla020006 Citrullus lanatus Cla020006 I 0.908
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.929
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.892
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.893
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.929
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.891
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.907
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.890
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.886
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.889
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.930
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.925
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.898
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.888
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.918
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.930
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.890
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.892
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.923
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.930
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.930
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.930
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.930
MLOC_326 Hordeum vulgare MLOC_326 I 0.936
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.888
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.921
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.925
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.889
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.921
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.936
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.928
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.889
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.927
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.929
MDP0000919693 Malus domestica MDP0000919693 I 0.892
MDP0000803116 Malus domestica MDP0000803116 I 0.928
MDP0000180409 Malus domestica MDP0000180409 I 0.888
MDP0000180408 Malus domestica MDP0000180408 I 0.888
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.930
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.894
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.933
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.896
mgf016085m Mimulus guttatus mgf016085m I 0.928
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.937
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.929
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.958
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.933
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.887
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.944
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.921
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.943
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.945
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.893
OBART06G23500 Oryza barthii OBART06G23500 I 0.911
OBART04G27990 Oryza barthii OBART04G27990 I 0.921
OBART03G39900 Oryza barthii OBART03G39900 I 0.891
OB03G47050 Oryza brachyantha OB03G47050 I 0.891
OB02G15090 Oryza brachyantha OB02G15090 I 0.928
OB06G31100 Oryza brachyantha OB06G31100 I 0.936
OB04G34990 Oryza brachyantha OB04G34990 I 0.921
OB08G27190 Oryza brachyantha OB08G27190 I 0.896
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.936
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.932
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.921
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.891
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.891
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.921
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.936
SPL10 Oryza indica BGIOSGA023408 I 0.936
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.921
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.932
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.921
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.891
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.936
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.921
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.932
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.921
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.891
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.936
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.925
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.936
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.891
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.891
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.921
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.891
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.936
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.921
SPL5 Oryza sativa OS02G0177300 I 0.932
SPL10 Oryza sativa OS06G0659100 I 0.936
SPL6 Oryza sativa OS03G0833300 I 0.891
SPL8 Oryza sativa OS04G0656500 I 0.921
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.892
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.892
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.921
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.921
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.899
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.936
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.936
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.948
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.932
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.953
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.925
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.935
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.974
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.930
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.891
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.930
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.890
Pm024528 Prunus mume Pm024528 I 0.890
Pm008475 Prunus mume Pm008475 I 0.888
Pm008474 Prunus mume Pm008474 I 0.888
Pm017777 Prunus mume Pm017777 I 0.896
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.890
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.888
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.896
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.888
30174.m008803 Ricinus communis 30174.m008803 I 0.930
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.930
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.927
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.977
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.984
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.977
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.954
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.954
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.891
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.891
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.940
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.940
Si034095m.g Setaria italica Si034095m.g I 0.892
Si022315m.g Setaria italica Si022315m.g I 0.921
Si017338m.g Setaria italica Si017338m.g I 0.936
Si006559m.g Setaria italica Si006559m.g I 0.936
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.930
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.930
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.930
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.930
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.892
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.930
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.921
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.936
TCM_005622 Theobroma cacao TCM_005622 I 0.930
TCM_021482 Theobroma cacao TCM_021482 I 0.893
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.889
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.910
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.936
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.889
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.886
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.921
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.889
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.888
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.907
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.927
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.893
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.893
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.921
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.919
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.933
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.936
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.891
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.930