CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc05g015840.2
(
Solanum lycopersicum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
Solyc05g015840.2
T323066_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.966
0.813
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.894
0.667
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.890
0.707
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc05g015840.2.1
SBP
20
94
CLVDGCNADLSECREYHRRHKVCEVHSKTAKVTIAGRDQRFCQQCSRFHSLVEFDDGKRSCRKRLDGHNRRRRKP
Links
Other
SBP
family TFs
Other
Solanum lycopersicum
TFs
314 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy