Ca_18942 (Cicer arietinum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Ca_18942 T323176_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW

WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.984 0.933
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN

NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.941 0.813
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN

NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.939 0.827
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_18942 SBP 185 259

Links

Other SBP family TFs
Other Cicer arietinum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL8 Arabidopsis thaliana AT1G02065 D 0.984
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.939
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.941
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.987
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.987
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.987
TCM_005622 Theobroma cacao TCM_005622 I 0.987
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.910
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.926
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.984
Cla006776 Citrullus lanatus Cla006776 I 0.987
Cla020006 Citrullus lanatus Cla020006 I 0.906
Pm017777 Prunus mume Pm017777 I 0.979
30174.m008803 Ricinus communis 30174.m008803 I 0.987
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.977
Si022315m.g Setaria italica Si022315m.g I 0.926
Si017338m.g Setaria italica Si017338m.g I 0.926
Si006559m.g Setaria italica Si006559m.g I 0.910
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.987
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.979
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.903
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.926
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.910
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.938
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.930
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.930
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.938
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.950
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.950
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.930
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.930
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.987
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.979
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.901
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.984
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.984
MDP0000803116 Malus domestica MDP0000803116 I 0.985
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.986
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.914
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.910
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.910
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.926
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.926
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.984
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.987
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.984
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.987
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.987
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.986
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.919
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.957
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.959
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.938
mgf016085m Mimulus guttatus mgf016085m I 0.987
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.956
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.984
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.984
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.983
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.986
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.987
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.987
PK25779.1 Cannabis sativa PK25779.1 I 0.987
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.937
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.926
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.924
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.907
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.903
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.926
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.949
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.955
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.942
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.948
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.946
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.959
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.921
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.961
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.987
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.987
AMTR_s00106p00144050 Amborella trichopoda AMTR_s00106p00144050 I 0.905
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.933
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.926
SPL10 Oryza indica BGIOSGA023408 I 0.910
Bo5g001290 Brassica oleracea Bo5g001290 I 0.984
Bo8g118210 Brassica oleracea Bo8g118210 I 0.984
Bra032662 Brassica rapa Bra032662 I 0.984
Bra033221 Brassica rapa Bra033221 I 0.984
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.904
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.903
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.926
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.984
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.981
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.915
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.926
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.910
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.926
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.911
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.926
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.910
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.933
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.926
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.910
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.926
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.910
SPL5 Oryza sativa OS02G0177300 I 0.933
SPL8 Oryza sativa OS04G0656500 I 0.926
SPL10 Oryza sativa OS06G0659100 I 0.910
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.987
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.910
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.910
MLOC_326 Hordeum vulgare MLOC_326 I 0.910
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.896
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.926
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.987
OB02G15090 Oryza brachyantha OB02G15090 I 0.915
OB04G34990 Oryza brachyantha OB04G34990 I 0.926
OB06G31100 Oryza brachyantha OB06G31100 I 0.910
OBART04G27990 Oryza barthii OBART04G27990 I 0.926
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.926
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.910
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.926
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.933
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.926
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.987