CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10018610.g
(
Linum usitatissimum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Lus10018610.g
T323538_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN
NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.914
0.813
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN
NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.910
0.733
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.910
0.733
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.910
0.733
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA
TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.907
0.720
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.907
0.720
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.907
0.720
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.894
0.720
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.894
0.720
SPL14
M11270_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.894
0.720
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.887
0.720
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10018610
SBP
86
160
CQAEKCTNDLSVAKAYHRRHRVCEYHSKAQVVLVSGLRQRFCQQCSRFHELPEFDDMKRSCRRRLAGHNERRRKN
Links
Other
SBP
family TFs
Other
Linum usitatissimum
TFs
195 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy