MDP0000865739 (Malus domestica)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 MDP0000865739 T323590_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.914 0.760
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.889 0.720
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.889 0.720
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.889 0.720
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.888 0.733
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.887 0.667
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.886 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000865739 SBP 65 139

Links

Other SBP family TFs
Other Malus domestica TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK22320.1 Cannabis sativa PK22320.1 D 0.914
PK06791.1 Cannabis sativa PK06791.1 D 0.887
SPL4 Arabidopsis thaliana AT1G53160 D 0.888
SPL3 Arabidopsis thaliana AT2G33810 D 0.889
SPL12 Arabidopsis thaliana AT3G60030 D 0.886
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.901
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.904
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.920
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.909
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.899
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.900
mgf001202m Mimulus guttatus mgf001202m I 0.925
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.896
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.948
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.887
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.900
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.886
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.891
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.887
Eucgr.F01828 Eucalyptus grandis Eucgr.F01828 I 0.888
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.905
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.887
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.924
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.887
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.910
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.903
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.893
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.915
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.891
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.890
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.886
28211.m000132 Ricinus communis 28211.m000132 I 0.893
Pm014154 Prunus mume Pm014154 I 0.965
Pm011381 Prunus mume Pm011381 I 0.897
Pm010075 Prunus mume Pm010075 I 0.935
Cla023735 Citrullus lanatus Cla023735 I 0.893
Cla021411 Citrullus lanatus Cla021411 I 0.890
Cla018827 Citrullus lanatus Cla018827 I 0.886
Cla009788 Citrullus lanatus Cla009788 I 0.910
Cla002263 Citrullus lanatus Cla002263 I 0.924
Cla001541 Citrullus lanatus Cla001541 I 0.896
29889.m003388 Ricinus communis 29889.m003388 I 0.896
29983.m003158 Ricinus communis 29983.m003158 I 0.899
30076.m004574 Ricinus communis 30076.m004574 I 0.887
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.896
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.898
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.887
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.910
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.909
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.918
30190.m011329 Ricinus communis 30190.m011329 I 0.917
30174.m008805 Ricinus communis 30174.m008805 I 0.908
30170.m014245 Ricinus communis 30170.m014245 I 0.915
30138.m003942 Ricinus communis 30138.m003942 I 0.886
Ca_24655 Cicer arietinum Ca_24655 I 0.924
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.897
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.907
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.905
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.910
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.908
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.931
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.936
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.898
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.900
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.912
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.900
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.924
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.892
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.908
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.888
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.889
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.893
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.942
PK26639.1 Cannabis sativa PK26639.1 I 0.916
PK25661.1 Cannabis sativa PK25661.1 I 0.915
PK17790.1 Cannabis sativa PK17790.1 I 0.912
PK03565.1 Cannabis sativa PK03565.1 I 0.945
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I 0.893
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.899
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.887
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.887
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.915
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.887
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.931
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.906
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.932
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.905
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.938
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.905
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.899
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.910
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.905
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.896
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.887
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.892
MDP0000589558 Malus domestica MDP0000589558 I 0.920
MDP0000180408 Malus domestica MDP0000180408 I 0.893
MDP0000158607 Malus domestica MDP0000158607 I 0.897
MDP0000149339 Malus domestica MDP0000149339 I 0.889
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.920
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.890
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.920
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.953
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.953
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.887
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.886
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.889
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.887
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.891
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.928
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.925
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.889
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.930
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.919
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.917
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.938
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.887
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.903
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.896
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.889
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.889
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.912
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.917
OBART08G20320 Oryza barthii OBART08G20320 I 0.889
OBART07G15570 Oryza barthii OBART07G15570 I 0.912
OBART04G20940 Oryza barthii OBART04G20940 I 0.917
OB08G27190 Oryza brachyantha OB08G27190 I 0.889
OB04G27960 Oryza brachyantha OB04G27960 I 0.918
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.892
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.908
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.893
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.892
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.942
Bra038324 Brassica rapa Bra038324 I 0.898
Bra021880 Brassica rapa Bra021880 I 0.893
Bra005470 Brassica rapa Bra005470 I 0.899
Bo4g042390 Brassica oleracea Bo4g042390 I 0.899
Bo4g005730 Brassica oleracea Bo4g005730 I 0.888
Bo2g062840 Brassica oleracea Bo2g062840 I 0.902
SPL15 Oryza indica BGIOSGA028994 I 0.889
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.912
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.917
AMTR_s00062p00211520 Amborella trichopoda AMTR_s00062p00211520 I 0.913
Bra041037 Brassica rapa Bra041037 I 0.888
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.937
F775_02791 Aegilops tauschii F775_02791 I 0.891
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.934
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.892
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.904
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.892
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.893
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.893
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.909
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.892
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.909
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.891
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.900
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.889
Ca_16243 Cicer arietinum Ca_16243 I 0.892
TCM_021482 Theobroma cacao TCM_021482 I 0.893
TCM_008150 Theobroma cacao TCM_008150 I 0.894
TCM_005620 Theobroma cacao TCM_005620 I 0.904
TCM_004922 Theobroma cacao TCM_004922 I 0.888
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.889
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.936
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.894
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.907
Si032170m.g Setaria italica Si032170m.g I 0.926
Si010262m.g Setaria italica Si010262m.g I 0.887
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.889
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.891
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.901
Ca_10879 Cicer arietinum Ca_10879 I 0.899
Ca_03548 Cicer arietinum Ca_03548 I 0.887
Ca_01036 Cicer arietinum Ca_01036 I 0.889
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.898
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.904
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.887
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.893
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.889
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.928
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.928
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.891
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.889
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.897
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.897
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.889
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.912
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.917
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.889
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.917
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.889
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.917
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.889
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.912
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.917
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.912
SPL7 Oryza sativa OS04G0551500 I 0.917
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.923
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.935
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.965
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.893
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.908
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.905
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.929
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.906
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.902
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.889
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.917
MDP0000255162 Malus domestica MDP0000255162 N 0.927
MDP0000538106 Malus domestica MDP0000538106 N 0.927