Carubv10008711m.g (Capsella rubella)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Carubv10008711m.g T324163_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008711m Sigma 70 335 405
Carubv10008978m Sigma 70 335 405

Links

Other Sigma 70 family TFs
Other Capsella rubella TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.972
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.873
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.972
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.972
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.958
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.958
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 1.000
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 1.000
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.944
mgf015824m Mimulus guttatus mgf015824m N 0.986
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.958
Lus10001339.g Linum usitatissimum Lus10001339.g N 0.704
Lus10005668.g Linum usitatissimum Lus10005668.g N 0.831
PK16345.1 Cannabis sativa PK16345.1 N 0.972
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 1.000
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.958
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.944
SapurV1A.0671s0070 Salix purpurea SapurV1A.0671s0070 N 0.718
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.700
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.958
MDP0000157652 Malus domestica MDP0000157652 N 0.944
Lus10020325.g Linum usitatissimum Lus10020325.g N 0.831
Lus10013642.g Linum usitatissimum Lus10013642.g N 0.704
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.775
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.704
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.704
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.901
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.873
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.901
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.944
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 1.000
Bra030732 Brassica rapa Bra030732 N 1.000
Bra018617 Brassica rapa Bra018617 N 0.972
Bo5g009070 Brassica oleracea Bo5g009070 N 0.972
SIGB Arabidopsis thaliana AT1G08540 N 1.000
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.972
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.930
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.930
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.958
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.958
30148.m001412 Ricinus communis 30148.m001412 N 0.972
Pm025497 Prunus mume Pm025497 N 0.958
Cla007091 Citrullus lanatus Cla007091 N 0.972
Ca_04693 Cicer arietinum Ca_04693 N 0.887
SIGB Vitis vinifera VIT_15s0024g00640 N 0.958
TCM_025741 Theobroma cacao TCM_025741 N 0.972
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.958
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.958
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.915