CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Nfia
(
Mus musculus
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03165 (MH1)
IPR003619
ENSMUSG00000028565
T324770_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA binding activity and chromatin binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within synapse maturation and ureter development. Located in nucleus. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in NFIA-related disorder. Orthologous to human NFIA (nuclear factor I A). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
1.000
1.000
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN
NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
1.000
1.000
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
1.000
1.000
NFIA
M11282_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
1.000
1.000
Nfia
M11291_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
1.000
1.000
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
0.934
0.934
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.934
0.934
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN
NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.934
0.934
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN
NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.934
0.934
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.934
0.934
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
0.934
0.934
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.934
0.934
Nfib
M09381_2.00
Mus musculus
BVWGCCARV
BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
0.934
0.934
NFIB
M11280_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
0.934
0.934
NFIB
M11281_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
0.934
0.934
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
0.934
0.934
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.934
0.934
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN
NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.868
0.868
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.857
0.857
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.857
0.857
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.857
0.857
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV
BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.857
0.857
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.857
0.857
NFIC
M11278_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.857
0.857
NFIC
M11279_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.857
0.857
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.857
0.857
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.780
0.780
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000074899
SMAD
68
172
KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSV
ENSMUSP00000099856
SMAD
68
172
KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSV
ENSMUSP00000102672
SMAD
68
172
KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSV
ENSMUSP00000102677
SMAD
68
172
KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSV
ENSMUSP00000114880
SMAD
60
164
KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSV
ENSMUSP00000130032
SMAD
68
172
KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSV
Links
Other
SMAD
family TFs
Other
Mus musculus
TFs
363 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy