NFIB (Otolemur garnettii)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 ENSOGAG00000016282 T324811_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
1.000 1.000
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
1.000 1.000
Nfib
M09381_2.00
Mus musculus
BVWGCCARV

BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
1.000 1.000
NFIB
M11280_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
1.000 1.000
NFIB
M11281_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
1.000 1.000
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN

NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
1.000 1.000
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
0.934 0.934
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN

NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
0.934 0.934
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
0.934 0.934
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
0.934 0.934
NFIA
M11282_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
0.934 0.934
Nfia
M11291_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
0.934 0.934
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA

TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.901 0.901
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN

NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.901 0.901
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN

NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.901 0.901
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR

YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.901 0.901
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN

NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.901 0.901
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN

NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.901 0.901
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN

NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.813 0.813
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN

NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.802 0.802
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN

NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.802 0.802
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV

BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.802 0.802
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV

BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.802 0.802
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR

YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.802 0.802
NFIC
M11278_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.802 0.802
NFIC
M11279_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.802 0.802
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.802 0.802
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR

YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000014575 SMAD 69 173

Links

Other SMAD family TFs
Other Otolemur garnettii TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Phyra80938 Phytophthora ramorum Phyra80938 D 0.000
maker-piw_contig_637-fgenesh-gene-0.5 Pythium iwayamai maker-piw_contig_637-fgenesh-gene-0.5 I 0.000
fgenesh1_kg.C_scaffold_15000102 Phytophthora capsici fgenesh1_kg.C_scaffold_15000102 I 0.000
maker-pve_contig_1017-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_1017-fgenesh-gene-0.2 I 0.000
maker-pve_contig_13-snap-gene-0.46 Pythium vexans maker-pve_contig_13-snap-gene-0.46 I 0.000
maker-pve_contig_734-snap-gene-0.9 Pythium vexans maker-pve_contig_734-snap-gene-0.9 I 0.000
estExt_Genewise1Plus.C_2050016 Phytophthora capsici estExt_Genewise1Plus.C_2050016 I 0.000
Physo132941 Phytophthora sojae Physo132941 I 0.000
PITG_14400 Phytophthora infestans PITG_14400 I 0.000
PYU1_G002849 Pythium ultimum PYU1_G002849 I 0.000
PK06453.1 Cannabis sativa PK06453.1 I 0.000
estExt_fgenesh1_kg.C_2050026 Phytophthora capsici estExt_fgenesh1_kg.C_2050026 I 0.000
maker-pir_contig_548-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_548-fgenesh-gene-0.3 I 0.000
maker-pag1_scaffold_266-snap-gene-0.11 Pythium aphanidermatum maker-pag1_scaffold_266-snap-gene-0.11 I 0.000
HpaG810857 Hyaloperonospora arabidopsidis HpaG810857 I 0.000
F443_20671 Phytophthora parasitica F443_20671 I 0.000
F443_20702 Phytophthora parasitica F443_20702 I 0.000
F443_20703 Phytophthora parasitica F443_20703 I 0.000
fgenesh_scip_prom.46568.8840 Phytophthora kernoviae fgenesh_scip_prom.46568.8840 I 0.000
maker-pag1_scaffold_151-fgenesh-gene-0.1 Pythium aphanidermatum maker-pag1_scaffold_151-fgenesh-gene-0.1 I 0.000
fgenesh_scip_prom.28083.5526 Phytophthora lateralis fgenesh_scip_prom.28083.5526 I 0.000
maker-par_contig_2748-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_2748-fgenesh-gene-0.0 N 0.000
Physo131337 Phytophthora sojae Physo131337 N 0.000
Physo132965 Phytophthora sojae Physo132965 N 0.000
fgenesh_scip_prom.28083.3853 Phytophthora lateralis fgenesh_scip_prom.28083.3853 N 0.000
PYU1_G002832 Pythium ultimum PYU1_G002832 N 0.000
PYU1_G002844 Pythium ultimum PYU1_G002844 N 0.000
maker-piw_contig_637-snap-gene-0.12 Pythium iwayamai maker-piw_contig_637-snap-gene-0.12 N 0.000
fgenesh_scip_prom.46568.7327 Phytophthora kernoviae fgenesh_scip_prom.46568.7327 N 0.000
Phyra80925 Phytophthora ramorum Phyra80925 N 0.000
maker-par_contig_4505-snap-gene-0.0 Pythium arrhenomanes maker-par_contig_4505-snap-gene-0.0 N 0.000
maker-pir_contig_516-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.3 N 0.000
maker-pir_contig_516-fgenesh-gene-0.8 Pythium irregulare maker-pir_contig_516-fgenesh-gene-0.8 N 0.000
maker-pir_contig_524-snap-gene-0.12 Pythium irregulare maker-pir_contig_524-snap-gene-0.12 N 0.000
maker-pag1_scaffold_154-snap-gene-0.26 Pythium aphanidermatum maker-pag1_scaffold_154-snap-gene-0.26 N 0.000
F443_16339 Phytophthora parasitica F443_16339 N 0.000
fgenesh_scip_prom.46568.9768 Phytophthora kernoviae fgenesh_scip_prom.46568.9768 N 0.000
fgenesh_scip_prom.46568.9767 Phytophthora kernoviae fgenesh_scip_prom.46568.9767 N 0.000
maker-pve_contig_364-fgenesh-gene-0.6 Pythium vexans maker-pve_contig_364-fgenesh-gene-0.6 N 0.000
Phyra73321 Phytophthora ramorum Phyra73321 N 0.000
Phyra80922 Phytophthora ramorum Phyra80922 N 0.000
PYU1_G002847 Pythium ultimum PYU1_G002847 N 0.000