Aan_R000637 (Calypte anna)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Aan_R000637 T325246_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
0.989 0.989
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN

NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
0.989 0.989
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
0.989 0.989
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD

HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
0.989 0.989
NFIA
M11282_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
0.989 0.989
Nfia
M11291_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
0.989 0.989
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA

TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.945 0.945
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN

NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.945 0.945
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN

NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.945 0.945
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR

YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.945 0.945
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN

NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.945 0.945
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN

NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.945 0.945
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA

TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
0.923 0.923
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
0.923 0.923
Nfib
M09381_2.00
Mus musculus
BVWGCCARV

BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
0.923 0.923
NFIB
M11280_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
0.923 0.923
NFIB
M11281_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
0.923 0.923
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN

NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
0.923 0.923
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN

NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.868 0.868
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN

NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.857 0.857
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN

NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.857 0.857
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV

BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.857 0.857
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV

BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.857 0.857
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR

YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.857 0.857
NFIC
M11278_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.857 0.857
NFIC
M11279_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.857 0.857
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN

NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.857 0.857
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR

YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aan_R000637 SMAD 62 166

Links

Other SMAD family TFs
Other Calypte anna TFs

363 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_28392 Aegilops tauschii F775_28392 I 0.000
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.000
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.000
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.000
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.000
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.000
ATMYB65 Arabidopsis thaliana AT3G11440 D 0.000
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.000
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.000
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.000
Bo5g136570 Brassica oleracea Bo5g136570 I 0.000
Bra034842 Brassica rapa Bra034842 I 0.000
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.000
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.000
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.000
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.000
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.000
Ca_06236 Cicer arietinum Ca_06236 I 0.000
Ca_21739 Cicer arietinum Ca_21739 I 0.000
Ca_20081 Cicer arietinum Ca_20081 I 0.000
Ca_15422 Cicer arietinum Ca_15422 I 0.000
Ca_25013 Cicer arietinum Ca_25013 I 0.000
Cla013880 Citrullus lanatus Cla013880 I 0.000
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.000
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.000
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.000
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.000
Thhalv10002011m.g Eutrema salsugineum Thhalv10002011m.g I 0.000
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.000
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.000
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.000
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.000
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.000
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.000
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.000
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.000
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.000
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.000
Gam1 Hordeum vulgare Q96464_HORVU D 0.000
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.000
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.000
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.000
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.000
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.000
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.000
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.000
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.000
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.000
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.000
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.000
mgf002965m Mimulus guttatus mgf002965m I 0.000
mgf025568m Mimulus guttatus mgf025568m I 0.000
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.000
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.000
OBART01G34660 Oryza barthii OBART01G34660 I 0.000
OB01G43550 Oryza brachyantha OB01G43550 I 0.000
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.000
GAM1 Oryza indica BGIOSGA004670 I 0.000
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.000
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.000
GAMYB Oryza sativa OS01G0812000 I 0.000
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.000
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.000
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.000
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.000
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.000
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.000
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.000
Pm016605 Prunus mume Pm016605 I 0.000
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.000
29785.m000932 Ricinus communis 29785.m000932 I 0.000
29686.m000890 Ricinus communis 29686.m000890 I 0.000
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.000
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.000
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.000
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.000
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.000
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.000
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.000
Si000907m.g Setaria italica Si000907m.g I 0.000
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.000
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.000
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.000
TCM_044611 Theobroma cacao TCM_044611 I 0.000
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.000
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.000
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.000
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.000