CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aan_R000637
(
Calypte anna
)
SMAD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03165 (MH1)
IPR003619
Aan_R000637
T325246_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NFIA
M03480_2.00
Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIA_1
0.989
0.989
NFIA
M03481_2.00
Homo sapiens
NNTGCCAANN
NNTTGGCANN
SELEX
Jolma et al.(2013)
NFIA_2
0.989
0.989
NFIA
M09379_2.00
Homo sapiens
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_HUMAN.H11MO.0.C
0.989
0.989
Nfia
M09383_2.00
Mus musculus
YTGGCWNYNDGCCAD
HTGGCHNRNWGCCAR
Misc
Kulakovskiy et al.(2013)
NFIA_MOUSE.H11MO.0.C
0.989
0.989
NFIA
M11282_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1A_Q6_01
0.989
0.989
Nfia
M11291_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFIA_02
0.989
0.989
NFIX
M03475_2.00
Homo sapiens
YTGGCNNNNTGCCAA
TTGGCANNNNGCCAR
SELEX
Jolma et al.(2013)
NFIX_1
0.945
0.945
NFIX
M03476_2.00
Homo sapiens
NYTGGCDNN
NNHGCCARN
SELEX
Jolma et al.(2013)
NFIX_2
0.945
0.945
NFIX
M03477_2.00
Homo sapiens
NYTGGCWNN
NNWGCCARN
SELEX
Jolma et al.(2013)
NFIX_3
0.945
0.945
NFIX
M03478_2.00
Homo sapiens
TTGGCANNNTGCCAR
YTGGCANNNTGCCAA
SELEX
Jolma et al.(2013)
NFIX_4
0.945
0.945
NFIX
M05741_2.00
Homo sapiens
NHTGGCDNNNTGCCADN
NHTGGCANNNHGCCADN
SELEX
Yin et al.(2017)
NFIX_FL_HT-SELEX
0.945
0.945
NFIX
M05742_2.00
Homo sapiens
NYTGGCDNNNTGCCARN
NYTGGCANNNHGCCARN
SELEX
Yin et al.(2017)
NFIX_FL_Methyl-HT-SELEX
0.945
0.945
NFIB
M03479_2.00
Homo sapiens
YTGGCANNNTGCCAA
TTGGCANNNTGCCAR
SELEX
Jolma et al.(2013)
NFIB_1
0.923
0.923
NFIB
M05747_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIB_FL_HT-SELEX
0.923
0.923
Nfib
M09381_2.00
Mus musculus
BVWGCCARV
BYTGGCWBV
Misc
Kulakovskiy et al.(2013)
NFIB_MOUSE.H11MO.0.C
0.923
0.923
NFIB
M11280_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6_01
0.923
0.923
NFIB
M11281_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1B_Q6
0.923
0.923
NFIB
M05748_2.00
Homo sapiens
NTTGGCDNNNTGCCARN
NYTGGCANNNHGCCAAN
SELEX
Yin et al.(2017)
NFIB_FL_Methyl-HT-SELEX
0.923
0.923
Nfic
M09385_2.00
Mus musculus
NBYTGGCWN
NWGCCARVN
Misc
Kulakovskiy et al.(2013)
NFIC_MOUSE.H11MO.0.A
0.868
0.868
NFIC
M05745_2.00
Homo sapiens
NTTGGCNNNNTGCCARN
NYTGGCANNNNGCCAAN
SELEX
Yin et al.(2017)
NFIC_FL_HT-SELEX
0.857
0.857
NFIC
M08164_2.00
Homo sapiens
NNCTTGGCANN
NNTGCCAAGNN
ChIP-seq
Mathelier et al.(2014)
MA0161.2
0.857
0.857
NFIC
M09378_2.00
Homo sapiens
BYTGGMHBYNDKCCMRV
BYKGGMHNRVDKCCARV
Misc
Kulakovskiy et al.(2013)
NFIC_HUMAN.H11MO.0.A
0.857
0.857
NFIC
M09635_2.00
Homo sapiens
BYTGSCAV
BTGSCARV
Misc
Heinz et al.(2010)
LNCaP-NF1_Unpublished
0.857
0.857
NFIC
M09636_2.00
Homo sapiens
BYTGGCHNNNDGCCAR
YTGGCHNNNDGCCARV
Misc
Heinz et al.(2010)
LNCAP-NF1_Unpublished
0.857
0.857
NFIC
M11278_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CTF1_01
0.857
0.857
NFIC
M11279_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NF1C_Q6
0.857
0.857
NFIC
M05746_2.00
Homo sapiens
NYTGGCNNNNYGCCARN
NYTGGCRNNNNGCCARN
SELEX
Yin et al.(2017)
NFIC_FL_Methyl-HT-SELEX
0.857
0.857
NfI
M03968_2.00
Drosophila melanogaster
YTGGCDNNNHGCCAR
YTGGCDNNNHGCCAR
SELEX
Nitta et al.(2015)
NfI_1
0.780
0.780
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aan_R000637
SMAD
62
166
KQKWASRLLAKLRKDIRPEFREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSV
Links
Other
SMAD
family TFs
Other
Calypte anna
TFs
363 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_28392
Aegilops tauschii
F775_28392
I
0.000
AMTR_s00037p00177500
Amborella trichopoda
AMTR_s00037p00177500
I
0.000
AMTR_s00038p00150140
Amborella trichopoda
AMTR_s00038p00150140
I
0.000
Aquca_014_00928
Aquilegia coerulea
Aquca_014_00928
I
0.000
MYB33
Arabidopsis lyrata
fgenesh2_kg.6__546__AT5G06100.3
I
0.000
ATMYB65
Arabidopsis lyrata
fgenesh2_kg.3__1182__AT3G11440.1
I
0.000
ATMYB65
Arabidopsis thaliana
AT3G11440
D
0.000
Bostr.19424s1075
Boechera stricta
Bostr.19424s1075
I
0.000
Bostr.13129s0364
Boechera stricta
Bostr.13129s0364
I
0.000
BRADI2G53010
Brachypodium distachyon
BRADI2G53010
I
0.000
Bo5g136570
Brassica oleracea
Bo5g136570
I
0.000
Bra034842
Brassica rapa
Bra034842
I
0.000
Cagra.1655s0026
Capsella grandiflora
Cagra.1655s0026
I
0.000
Cagra.2117s0052
Capsella grandiflora
Cagra.2117s0052
I
0.000
Carubv10000715m.g
Capsella rubella
Carubv10000715m.g
I
0.000
Carubv10013393m.g
Capsella rubella
Carubv10013393m.g
I
0.000
evm.TU.supercontig_33.151
Carica papaya
evm.TU.supercontig_33.151
I
0.000
Ca_06236
Cicer arietinum
Ca_06236
I
0.000
Ca_21739
Cicer arietinum
Ca_21739
I
0.000
Ca_20081
Cicer arietinum
Ca_20081
I
0.000
Ca_15422
Cicer arietinum
Ca_15422
I
0.000
Ca_25013
Cicer arietinum
Ca_25013
I
0.000
Cla013880
Citrullus lanatus
Cla013880
I
0.000
Ciclev10000756m.g
Citrus clementina
Ciclev10000756m.g
I
0.000
orange1.1g011938m.g
Citrus sinensis
orange1.1g011938m.g
I
0.000
Cucsa.364400
Cucumis sativus
Cucsa.364400
I
0.000
Eucgr.G03183
Eucalyptus grandis
Eucgr.G03183
I
0.000
Thhalv10002011m.g
Eutrema salsugineum
Thhalv10002011m.g
I
0.000
Thhalv10020455m.g
Eutrema salsugineum
Thhalv10020455m.g
I
0.000
Thhalv10013329m.g
Eutrema salsugineum
Thhalv10013329m.g
I
0.000
gene00431-v1.0-hybrid
Fragaria vesca
gene00431-v1.0-hybrid
I
0.000
GLYMA15G35860
Glycine max
GLYMA15G35860
I
0.000
GLYMA13G25716
Glycine max
GLYMA13G25716
I
0.000
GLYMA08G42955
Glycine max
GLYMA08G42955
I
0.000
GLYMA13G04031
Glycine max
GLYMA13G04031
I
0.000
Gorai.010G212500
Gossypium raimondii
Gorai.010G212500
I
0.000
Gorai.009G301100
Gossypium raimondii
Gorai.009G301100
I
0.000
Gorai.012G022000
Gossypium raimondii
Gorai.012G022000
I
0.000
Gam1
Hordeum vulgare
Q96464_HORVU
D
0.000
Lus10026142.g
Linum usitatissimum
Lus10026142.g
I
0.000
Lus10008685.g
Linum usitatissimum
Lus10008685.g
I
0.000
Lus10026787.g
Linum usitatissimum
Lus10026787.g
I
0.000
Lus10036103.g
Linum usitatissimum
Lus10036103.g
I
0.000
chr3.CM0005.370.nc
Lotus japonicus
chr3.CM0005.370.nc
I
0.000
cassava1461.valid.m1
Manihot esculenta
cassava1461.valid.m1
I
0.000
cassava44767.m1
Manihot esculenta
cassava44767.m1
I
0.000
cassava40302.m1
Manihot esculenta
cassava40302.m1
I
0.000
MTR_3g052430
Medicago truncatula
MTR_3g052430
I
0.000
MTR_8g042410
Medicago truncatula
MTR_8g042410
I
0.000
MTR_3g011610
Medicago truncatula
MTR_3g011610
I
0.000
mgf002965m
Mimulus guttatus
mgf002965m
I
0.000
mgf025568m
Mimulus guttatus
mgf025568m
I
0.000
GSMUA_Achr1G17150_001
Musa acuminata
GSMUA_Achr1G17150_001
I
0.000
GSMUA_AchrUn_randomG15100_001
Musa acuminata
GSMUA_AchrUn_randomG15100_001
I
0.000
OBART01G34660
Oryza barthii
OBART01G34660
I
0.000
OB01G43550
Oryza brachyantha
OB01G43550
I
0.000
OGLUM01G20920
Oryza glumaepatula
OGLUM01G20920
I
0.000
GAM1
Oryza indica
BGIOSGA004670
I
0.000
OLONG_020610
Oryza longistaminata
OLONG_020610
I
0.000
OMERI01G31990
Oryza meridionalis
OMERI01G31990
I
0.000
GAMYB
Oryza sativa
OS01G0812000
I
0.000
GAM1_ORYSI
Oryza sativa
GAM1_ORYSI
D
0.000
Pavir.Ea03206
Panicum virgatum
Pavir.Ea03206
I
0.000
Pavir.Eb03517
Panicum virgatum
Pavir.Eb03517
I
0.000
PDK_20s1831811g001
Phoenix dactylifera
PDK_20s1831811g001
I
0.000
POPTR_0001s07330
Populus trichocarpa
POPTR_0001s07330
I
0.000
POPTR_0003s18900
Populus trichocarpa
POPTR_0003s18900
I
0.000
POPTR_0009s02380
Populus trichocarpa
POPTR_0009s02380
I
0.000
Pm016605
Prunus mume
Pm016605
I
0.000
PRUPE_ppa003628mg
Prunus persica
PRUPE_ppa003628mg
I
0.000
29785.m000932
Ricinus communis
29785.m000932
I
0.000
29686.m000890
Ricinus communis
29686.m000890
I
0.000
SapurV1A.0537s0200
Salix purpurea
SapurV1A.0537s0200
I
0.000
SapurV1A.1951s0020
Salix purpurea
SapurV1A.1951s0020
I
0.000
SapurV1A.0369s0230
Salix purpurea
SapurV1A.0369s0230
I
0.000
SELMODRAFT_84369
Selaginella moellendorffii
SELMODRAFT_84369
I
0.000
SELMODRAFT_117411
Selaginella moellendorffii
SELMODRAFT_117411
I
0.000
SELMODRAFT_128781
Selaginella moellendorffii
SELMODRAFT_128781
I
0.000
SELMODRAFT_81112
Selaginella moellendorffii
SELMODRAFT_81112
I
0.000
Si000907m.g
Setaria italica
Si000907m.g
I
0.000
Solyc06g073640.2
Solanum lycopersicum
Solyc06g073640.2
I
0.000
PGSC0003DMG400005918
Solanum tuberosum
PGSC0003DMG400005918
I
0.000
Sb03g037680
Sorghum bicolor
Sb03g037680
I
0.000
TCM_044611
Theobroma cacao
TCM_044611
I
0.000
TRAES3BF027700010CFD_g
Triticum aestivum
TRAES3BF027700010CFD_g
I
0.000
TRIUR3_27104
Triticum urartu
TRIUR3_27104
I
0.000
VIT_13s0067g01630
Vitis vinifera
VIT_13s0067g01630
I
0.000
GRMZM2G139688
Zea mays
GRMZM2G139688
I
0.000