Ogr06720 (Ophisaurus gracilis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Ogr06720 T325333_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Smad4
M05889_2.00
Mus musculus
KCYAGACR

YGTCTRGM
SMiLE-seq
Isakova et al.(2017)
Smad4
0.971 0.971
SMAD4
M09377_2.00
Homo sapiens
DRGTGNSAGACWN

NWGTCTSNCACYH
Misc
Kulakovskiy et al.(2013)
SMAD4_HUMAN.H11MO.0.B
0.971 0.971
Smad4
M09382_2.00
Mus musculus
DGWGNBAGVCWN

NWGBCTVNCWCH
Misc
Kulakovskiy et al.(2013)
SMAD4_MOUSE.H11MO.0.A
0.971 0.971
SMAD4
M09634_2.00
Homo sapiens
NNNYGTCTGS

SCAGACRNNN
Misc
Heinz et al.(2010)
ESC-SMAD4_GSE29422
0.971 0.971
SMAD4
M11275_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q4
0.971 0.971
SMAD4
M11276_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6_01
0.971 0.971
SMAD4
M11277_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SMAD4_Q6
0.971 0.971
Med
M06447_2.00
Drosophila melanogaster
KCGBCDKKSHVT

ABDSMMHGVCGM
B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655
0.951 0.951
Med
M09693_2.00
Drosophila melanogaster
YYBYVYCTGYY

RRCAGRBRVRR
Misc
Kulakovskiy et al.(2009)
Med
0.951 0.951
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr06720 SMAD 32 133

Links

Other SMAD family TFs
Other Ophisaurus gracilis TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA001093 Oryza indica BGIOSGA001093 I 0.000
BGIOSGA004705 Oryza indica BGIOSGA004705 I 0.000
BGIOSGA017860 Oryza indica BGIOSGA017860 I 0.000
BGIOSGA019621 Oryza indica BGIOSGA019621 I 0.000
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.000
BGIOSGA030535 Oryza indica BGIOSGA030535 I 0.000
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.000
BRADI2G53520 Brachypodium distachyon BRADI2G53520 I 0.000
BRADI4G28280 Brachypodium distachyon BRADI4G28280 I 0.000
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I 0.000
F775_00860 Aegilops tauschii F775_00860 I 0.000
F775_03184 Aegilops tauschii F775_03184 I 0.000
F775_07845 Aegilops tauschii F775_07845 I 0.000
F775_22808 Aegilops tauschii F775_22808 I 0.000
F775_24185 Aegilops tauschii F775_24185 I 0.000
Gorai.008G253300 Gossypium raimondii Gorai.008G253300 I 0.000
GRMZM2G025895 Zea mays GRMZM2G025895 I 0.000
GRMZM2G061408 Zea mays GRMZM2G061408 I 0.000
GRMZM2G139815 Zea mays GRMZM2G139815 I 0.000
GRMZM2G163418 Zea mays GRMZM2G163418 I 0.000
GRMZM2G432583 Zea mays GRMZM2G432583 I 0.000
GSMUA_Achr1G27980_001 Musa acuminata GSMUA_Achr1G27980_001 I 0.000
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I 0.000
LPERR01G30500 Leersia perrieri LPERR01G30500 I 0.000
LPERR05G16150 Leersia perrieri LPERR05G16150 I 0.000
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
LPERR09G04330 Leersia perrieri LPERR09G04330 I 0.000
MLOC_15430 Hordeum vulgare MLOC_15430 I 0.000
MLOC_5971 Hordeum vulgare MLOC_5971 I 0.000
MLOC_68061 Hordeum vulgare MLOC_68061 I 0.000
MLOC_7000 Hordeum vulgare MLOC_7000 I 0.000
MLOC_74974 Hordeum vulgare MLOC_74974 I 0.000
OB01G44170 Oryza brachyantha OB01G44170 I 0.000
OB05G27830 Oryza brachyantha OB05G27830 I 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
OB05G34020 Oryza brachyantha OB05G34020 I 0.000
OB09G14040 Oryza brachyantha OB09G14040 I 0.000
OBART01G25160 Oryza barthii OBART01G25160 I 0.000
OBART01G35380 Oryza barthii OBART01G35380 I 0.000
OBART05G11710 Oryza barthii OBART05G11710 I 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OBART05G26430 Oryza barthii OBART05G26430 I 0.000
OGLUM01G28930 Oryza glumaepatula OGLUM01G28930 I 0.000
OGLUM01G39390 Oryza glumaepatula OGLUM01G39390 I 0.000
OGLUM05G12430 Oryza glumaepatula OGLUM05G12430 I 0.000
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.000
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
OGLUM05G28080 Oryza glumaepatula OGLUM05G28080 I 0.000
OLONG_000636 Oryza longistaminata OLONG_000636 I 0.000
OLONG_010067 Oryza longistaminata OLONG_010067 I 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OMERI01G22920 Oryza meridionalis OMERI01G22920 I 0.000
OMERI01G32510 Oryza meridionalis OMERI01G32510 I 0.000
OMERI03G30520 Oryza meridionalis OMERI03G30520 I 0.000
OMERI05G10380 Oryza meridionalis OMERI05G10380 I 0.000
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.000
OMERI05G18250 Oryza meridionalis OMERI05G18250 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
ONIVA01G28420 Oryza nivara ONIVA01G28420 I 0.000
ONIVA01G40390 Oryza nivara ONIVA01G40390 I 0.000
ONIVA05G12100 Oryza nivara ONIVA05G12100 I 0.000
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.000
ONIVA05G21460 Oryza nivara ONIVA05G21460 I 0.000
ONIVA05G28480 Oryza nivara ONIVA05G28480 I 0.000
ONIVA09G05410 Oryza nivara ONIVA09G05410 I 0.000
OPUNC01G25080 Oryza punctata OPUNC01G25080 I 0.000
OPUNC01G34300 Oryza punctata OPUNC01G34300 I 0.000
OPUNC05G10020 Oryza punctata OPUNC05G10020 I 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
OPUNC05G24020 Oryza punctata OPUNC05G24020 I 0.000
OPUNC09G05480 Oryza punctata OPUNC09G05480 I 0.000
ORGLA01G0204900 Oryza glaberrima ORGLA01G0204900 I 0.000
ORGLA01G0292200 Oryza glaberrima ORGLA01G0292200 I 0.000
ORGLA03G0413100 Oryza glaberrima ORGLA03G0413100 I 0.000
ORGLA05G0099400 Oryza glaberrima ORGLA05G0099400 I 0.000
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA05G0229200 Oryza glaberrima ORGLA05G0229200 I 0.000
ORUFI01G28020 Oryza rufipogon ORUFI01G28020 I 0.000
ORUFI01G38690 Oryza rufipogon ORUFI01G38690 I 0.000
ORUFI05G12710 Oryza rufipogon ORUFI05G12710 I 0.000
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.000
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I 0.000
ORUFI05G28340 Oryza rufipogon ORUFI05G28340 I 0.000
ORUFI09G06720 Oryza rufipogon ORUFI09G06720 I 0.000
OS01G0656400 Oryza sativa OS01G0656400 I 0.000
OS01G0821600 Oryza sativa OS01G0821600 I 0.000
OS05G0322900 Oryza sativa OS05G0322900 I 0.000
OS05G0478400 Oryza sativa OS05G0478400 I 0.000
OS05G0478800 Oryza sativa OS05G0478800 I 0.000
OS05G0571200 Oryza sativa OS05G0571200 I 0.000
OS09G0334500 Oryza sativa OS09G0334500 I 0.000
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I 0.000
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I 0.000
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.000
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.000
Pavir.J07662 Panicum virgatum Pavir.J07662 I 0.000
Pavir.J18239 Panicum virgatum Pavir.J18239 I 0.000
Pavir.J35902 Panicum virgatum Pavir.J35902 I 0.000
Pavir.J41073 Panicum virgatum Pavir.J41073 I 0.000
PDK_20s1440981g001 Phoenix dactylifera PDK_20s1440981g001 I 0.000
PGSC0003DMG400005835 Solanum tuberosum PGSC0003DMG400005835 I 0.000
Sb02g022280 Sorghum bicolor Sb02g022280 I 0.000
Sb02g022290 Sorghum bicolor Sb02g022290 I 0.000
Sb06g013835 Sorghum bicolor Sb06g013835 I 0.000
Sb09g029050 Sorghum bicolor Sb09g029050 I 0.000
Si002401m.g Setaria italica Si002401m.g I 0.000
Si024816m.g Setaria italica Si024816m.g I 0.000
Si025181m.g Setaria italica Si025181m.g I 0.000
Si027574m.g Setaria italica Si027574m.g I 0.000
Solyc08g008280.2 Solanum lycopersicum Solyc08g008280.2 I 0.000
TRAES3BF001300030CFD_g Triticum aestivum TRAES3BF001300030CFD_g I 0.000
TRAES3BF005100010CFD_g Triticum aestivum TRAES3BF005100010CFD_g I 0.000
TRAES3BF051200110CFD_g Triticum aestivum TRAES3BF051200110CFD_g I 0.000
Traes_5AL_B4E8A3115 Triticum aestivum Traes_5AL_B4E8A3115 I 0.000
TRIUR3_03056 Triticum urartu TRIUR3_03056 N 0.000
TRIUR3_05298 Triticum urartu TRIUR3_05298 I 0.000
TRIUR3_17401 Triticum urartu TRIUR3_17401 I 0.000
TRIUR3_20905 Triticum urartu TRIUR3_20905 N 0.000
TRIUR3_22128 Triticum urartu TRIUR3_22128 I 0.000