CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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COCSADRAFT_234458
(
Bipolaris sorokiniana
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
COCSADRAFT_234458
T327151_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.624
0.522
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.494
0.362
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.494
0.362
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.484
0.319
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.484
0.319
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EMD61695
Sox
203
271
IARPMNSFMLYRSAFAERAKSWCLQNNHQVVSSVAGESWPLEPPEIRDLYSEYAKLERINHQNAHPTYK
Links
Other
Sox
family TFs
Other
Bipolaris sorokiniana
TFs
290 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACAC_0000752101
Angiostrongylus cantonensis
ACAC_0000752101
I
0.000
ACOC_0000580401
Angiostrongylus costaricensis
ACOC_0000580401
I
0.000
ALUE_0001545901
Ascaris lumbricoides
ALUE_0001545901
I
0.000
ANCCAN_00554
Ancylostoma caninum
ANCCAN_00554
I
0.000
ANCCEY_12899
Ancylostoma ceylanicum
ANCCEY_12899
I
0.000
ASU_04064
Ascaris suum
ASU_04064
I
0.000
Bm4254
Brugia malayi
Bm4254
I
0.000
BXY_0772600
Bursaphelenchus xylophilus
BXY_0772600
I
0.000
CBG13548
Caenorhabditis briggsae
CBG13548
I
0.000
CBG13549
Caenorhabditis briggsae
CBG13549
D
0.000
CBN10937
Caenorhabditis brenneri
CBN10937
I
0.000
CJA11149
Caenorhabditis japonica
CJA11149
I
0.000
CJA18864
Caenorhabditis japonica
CJA18864
I
0.000
CRE31380
Caenorhabditis remanei
CRE31380
I
0.000
CRE31381
Caenorhabditis remanei
CRE31381
I
0.000
DICVIV_08848
Dictyocaulus viviparus
DICVIV_08848
I
0.000
egl-18
Caenorhabditis elegans
WBGene00001186
I
0.000
elt-6
Caenorhabditis elegans
WBGene00001253
D
0.000
EVEC_0001284001
Enterobius vermicularis
EVEC_0001284001
I
0.000
GPLIN_000855200
Globodera pallida
GPLIN_000855200
I
0.000
Hba_15007
Heterorhabditis bacteriophora
Hba_15007
I
0.000
HCOI01886300
Haemonchus contortus
HCOI01886300
I
0.000
L596_g25881
Steinernema carpocapsae
L596_g25881
I
0.000
L889_g31947
Steinernema feltiae
L889_g31947
I
0.000
L892_g6412
Steinernema scapterisci
L892_g6412
I
0.000
L893_g28710
Steinernema glaseri
L893_g28710
I
0.000
L898_g8209
Steinernema monticolum
L898_g8209
I
0.000
LOAG_07460
Loa loa
LOAG_07460
I
0.000
maker-nMf.1.1.scaf08707-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf08707-augustus-gene-0.3
I
0.000
Minc08374
Meloidogyne incognita
Minc08374
I
0.000
nAv.1.0.1.g03924
Acanthocheilonema viteae
nAv.1.0.1.g03924
I
0.000
NBR_0001940901
Nippostrongylus brasiliensis
NBR_0001940901
I
0.000
nDi.2.2.2.g02293
Dirofilaria immitis
nDi.2.2.2.g02293
I
0.000
NECAME_05031
Necator americanus
NECAME_05031
I
0.000
nLs.2.1.2.g04395
Litomosoides sigmodontis
nLs.2.1.2.g04395
I
0.000
nOo.2.0.1.g08948
Onchocerca ochengi
nOo.2.0.1.g08948
I
0.000
nRc.2.0.1.g15145
Romanomermis culicivorax
nRc.2.0.1.g15145
I
0.000
OESDEN_09249
Oesophagostomum dentatum
OESDEN_09249
I
0.000
OFLC_0000492601
Onchocerca flexuosa
OFLC_0000492601
I
0.000
PTRK_0001379700
Parastrongyloides trichosuri
PTRK_0001379700
I
0.000
RSKR_0000556500
Rhabditophanes kr3021
RSKR_0000556500
I
0.000
SBAD_0000818101
Soboliphyme baturini
SBAD_0000818101
I
0.000
scaffold1024-EXSNAP2012.4
Pristionchus exspectatus
scaffold1024-EXSNAP2012.4
I
0.000
scaffold1033-EXSNAP2012.2
Pristionchus exspectatus
scaffold1033-EXSNAP2012.2
I
0.000
SMUV_0001093901
Syphacia muris
SMUV_0001093901
I
0.000
SPAL_0001590300
Strongyloides papillosus
SPAL_0001590300
I
0.000
SSTP_0001171300
Strongyloides stercoralis
SSTP_0001171300
I
0.000
SVE_0995400
Strongyloides venezuelensis
SVE_0995400
I
0.000
TCLT_0000574501
Thelazia callipaeda
TCLT_0000574501
I
0.000
WBGene00241875
Onchocerca volvulus
WBGene00241875
I
0.000
WUBG_10387
Wuchereria bancrofti
WUBG_10387
I
0.000