HMG20A (Callithrix jacchus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSCJAG00000011131 T327723_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN

NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.563 0.696
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000020551 Sox 103 171
ENSCJAP00000020556 Sox 1 58
ENSCJAP00000047384 Sox 103 171

Links

Other Sox family TFs
Other Callithrix jacchus TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30174.m008836 Ricinus communis 30174.m008836 N 0.000
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N 0.000
cassava14439.m1 Manihot esculenta cassava14439.m1 N 0.000
cassava17724.valid.m1 Manihot esculenta cassava17724.valid.m1 N 0.000
Cla006768 Citrullus lanatus Cla006768 N 0.000
Cucsa.120560 Cucumis sativus Cucsa.120560 N 0.000
evm.TU.supercontig_145.1 Carica papaya evm.TU.supercontig_145.1 N 0.000
gene30812-v1.0-hybrid Fragaria vesca gene30812-v1.0-hybrid N 0.000
Gorai.007G089600 Gossypium raimondii Gorai.007G089600 N 0.000
Lus10009283.g Linum usitatissimum Lus10009283.g N 0.000
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N 0.000
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N 0.000
PK01122.1 Cannabis sativa PK01122.1 N 0.000
PK22765.1 Cannabis sativa PK22765.1 N 0.000
Sb04g004830 Sorghum bicolor Sb04g004830 N 0.000
TCM_005554 Theobroma cacao TCM_005554 N 0.000