CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSCPOG00000024750
(
Cavia porcellus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSCPOG00000024750
T327775_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox8
M00197_2.00
Mus musculus
NNNWBAAT
ATTVWNNN
PBM
Badis et al.(2009)
Sox8_1733
0.335
1.000
Sox10
M00826_2.00
Mus musculus
NNNNWBAAT
ATTVWNNNN
PBM
Weirauch et al.(2013)
pTH1729
0.335
1.000
SOX10
M03491_2.00
Homo sapiens
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
SOX10_1
0.335
1.000
SOX10
M03492_2.00
Homo sapiens
AACAATRTKCAGTGTT
AACACTGMAYATTGTT
SELEX
Jolma et al.(2013)
SOX10_2
0.335
1.000
SOX10
M03493_2.00
Homo sapiens
ATCAATTKCAGTGAT
ATCACTGMAATTGAT
SELEX
Jolma et al.(2013)
SOX10_3
0.335
1.000
SOX10
M03494_2.00
Homo sapiens
ATGAATTKCAGTCAT
ATGACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX10_4
0.335
1.000
SOX10
M03495_2.00
Homo sapiens
TGAATGTKCAGTCA
TGACTGMACATTCA
SELEX
Jolma et al.(2013)
SOX10_5
0.335
1.000
SOX8
M03483_2.00
Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX8_1
0.335
1.000
SOX8
M03484_2.00
Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_2
0.335
1.000
SOX8
M03485_2.00
Homo sapiens
RAACAATTKCAGTGTTN
NAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX8_3
0.335
1.000
SOX8
M03486_2.00
Homo sapiens
HATCAATTKCAGTGATN
NATCACTGMAATTGATD
SELEX
Jolma et al.(2013)
SOX8_4
0.335
1.000
SOX8
M03487_2.00
Homo sapiens
TGAATRTKCAGTCA
TGACTGMAYATTCA
SELEX
Jolma et al.(2013)
SOX8_5
0.335
1.000
SOX8
M03488_2.00
Homo sapiens
AACAATTDCAGTGTT
AACACTGHAATTGTT
SELEX
Jolma et al.(2013)
SOX8_6
0.335
1.000
SOX8
M03489_2.00
Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT
SELEX
Jolma et al.(2013)
SOX8_7
0.335
1.000
SOX8
M03490_2.00
Homo sapiens
MATCAATTGCAGTGATK
MATCACTGCAATTGATK
SELEX
Jolma et al.(2013)
SOX8_8
0.335
1.000
SOX9
M03501_2.00
Homo sapiens
DDACAATRV
BYATTGTHH
SELEX
Jolma et al.(2013)
SOX9_1
0.335
1.000
SOX9
M03502_2.00
Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT
SELEX
Jolma et al.(2013)
SOX9_2
0.335
1.000
SOX9
M03503_2.00
Homo sapiens
ATCAATRTKCAGTGAT
ATCACTGMAYATTGAT
SELEX
Jolma et al.(2013)
SOX9_3
0.335
1.000
SOX9
M03504_2.00
Homo sapiens
ATGAATRTKCAGTCAT
ATGACTGMAYATTCAT
SELEX
Jolma et al.(2013)
SOX9_4
0.335
1.000
SOX9
M03505_2.00
Homo sapiens
RAACAATTKCAGTGTTH
DAACACTGMAATTGTTY
SELEX
Jolma et al.(2013)
SOX9_5
0.335
1.000
SOX9
M03506_2.00
Homo sapiens
NATCAATKKYAGTGATN
NATCACTRMMATTGATN
SELEX
Jolma et al.(2013)
SOX9_6
0.335
1.000
SOX9
M03507_2.00
Homo sapiens
NATGAATTKCAGTCATN
NATGACTGMAATTCATN
SELEX
Jolma et al.(2013)
SOX9_7
0.335
1.000
Sox10
M03535_2.00
Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
Sox10_1
0.335
1.000
Sox10
M03536_2.00
Mus musculus
ATCAATTKCAGTGAT
ATCACTGMAATTGAT
SELEX
Jolma et al.(2013)
Sox10_2
0.335
1.000
Sox10
M03537_2.00
Mus musculus
ATGAATTDCAGTCAT
ATGACTGHAATTCAT
SELEX
Jolma et al.(2013)
Sox10_3
0.335
1.000
SOX10
M05759_2.00
Homo sapiens
AACAATRNNNYATTGTT
AACAATRNNNYATTGTT
SELEX
Yin et al.(2017)
SOX10_eDBD_HT-SELEX
0.335
1.000
SOX10
M05761_2.00
Homo sapiens
NACAATRVNNBYATTGTN
NACAATRVNNBYATTGTN
SELEX
Yin et al.(2017)
SOX10_FL_HT-SELEX
0.335
1.000
SOX8
M05749_2.00
Homo sapiens
NDAACAATRV
BYATTGTTHN
SELEX
Yin et al.(2017)
SOX8_eDBD_HT-SELEX
0.335
1.000
SOX8
M05751_2.00
Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_HT-SELEX
0.335
1.000
SOX9
M05767_2.00
Homo sapiens
HDAACAATRV
BYATTGTTHD
SELEX
Yin et al.(2017)
SOX9_eDBD_HT-SELEX
0.335
1.000
SOX10
M05891_2.00
Homo sapiens
BBCWWTGTTH
DAACAWWGVV
SMiLE-seq
Isakova et al.(2017)
SOX10
0.335
1.000
SOX9
M02716_2.00
Homo sapiens
DAACAATRG
CYATTGTTH
SELEX
Mathelier et al.(2014)
MA0077.1
0.335
1.000
SOX10
M08165_2.00
Homo sapiens
NNVACAAAGVN
NBCTTTGTBNN
ChIP-seq
Mathelier et al.(2014)
MA0442.2
0.335
1.000
SOX10
M09387_2.00
Homo sapiens
VAADRVVNBCWTTGTN
NACAAWGVNBBYHTTB
Misc
Kulakovskiy et al.(2013)
SOX10_HUMAN.H11MO.0.B
0.335
1.000
SOX9
M09389_2.00
Homo sapiens
RMACAAWGVNNBYHTT
AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_HUMAN.H11MO.0.B
0.335
1.000
Sox10
M09403_2.00
Mus musculus
VAADRVVNBCWTTGTN
NACAAWGVNBBYHTTB
Misc
Kulakovskiy et al.(2013)
SOX10_MOUSE.H11MO.0.B
0.335
1.000
Sox9
M09399_2.00
Mus musculus
RMACAAWGVNNBYHTT
AADRVNNBCWTTGTKY
Misc
Kulakovskiy et al.(2013)
SOX9_MOUSE.H11MO.0.A
0.335
1.000
SOX10
M11296_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q3
0.335
1.000
SOX10
M11297_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q6_01
0.335
1.000
SOX10
M11298_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX10_Q6
0.335
1.000
SOX9
M11304_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_09
0.335
1.000
SOX9
M11305_2.00
Homo sapiens
NNNDAACAATRRNN
NNYYATTGTTHNNN
Transfac
Matys et al.(2006)
V$SOX9_B1
0.335
1.000
SOX9
M11306_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q4
0.335
1.000
SOX9
M11307_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX9_Q5
0.335
1.000
SOX10
M05760_2.00
Homo sapiens
AACAATRSNSYATTGTT
AACAATRSNSYATTGTT
SELEX
Yin et al.(2017)
SOX10_eDBD_Methyl-HT-SELEX
0.335
1.000
SOX10
M05762_2.00
Homo sapiens
NACAATRVNNBYATTGTN
NACAATRVNNBYATTGTN
SELEX
Yin et al.(2017)
SOX10_FL_Methyl-HT-SELEX
0.335
1.000
SOX8
M05750_2.00
Homo sapiens
BYATTGTTNN
NNAACAATRV
SELEX
Yin et al.(2017)
SOX8_eDBD_Methyl-HT-SELEX
0.335
1.000
SOX8
M05752_2.00
Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT
SELEX
Yin et al.(2017)
SOX8_FL_Methyl-HT-SELEX
0.335
1.000
SOX9
M05768_2.00
Homo sapiens
NNNACAATRS
SYATTGTNNN
SELEX
Yin et al.(2017)
SOX9_eDBD_Methyl-HT-SELEX
0.335
1.000
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000015167
Sox
105
132
VKRPMNAFMVWAQAARRKLADQYPHLHN
Links
Other
Sox
family TFs
Other
Cavia porcellus
TFs
219 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy