ENSXMAG00000014710 (Xiphophorus maculatus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSXMAG00000014710 T329410_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tcf7l2
M00198_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Tcf7l2_3461
0.741 1.000
Tcf7l2
M02646_2.00
Mus musculus
SATCAAAGN

NCTTTGATS
SELEX
Hallikas et al.(2006)
Tcf4
0.741 1.000
TCF7L2
M08167_2.00
Homo sapiens
NVASWTCAAAGVVN

NBBCTTTGAWSTBN
ChIP-seq
Mathelier et al.(2014)
MA0523.1
0.741 1.000
TCF7L2
M09393_2.00
Homo sapiens
DGCAGSTGKS

SMCASCTGCH
Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C
0.741 1.000
TCF7L2
M09394_2.00
Homo sapiens
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A
0.741 1.000
Tcf7l2
M09401_2.00
Mus musculus
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A
0.741 1.000
TCF7L2
M09638_2.00
Homo sapiens
CCTTTGAWST

ASWTCAAAGG
Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196
0.741 1.000
TCF7L2
M11316_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_01
0.741 1.000
TCF7L2
M11317_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_02
0.741 1.000
TCF7L2
M11318_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5
0.741 1.000
TCF7L2
M11319_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF7L2_06
0.741 1.000
Lef1
M00200_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Lef1_3504
0.741 0.986
LEF1
M03511_2.00
Homo sapiens
NRAGATCAAAGRVWW

WWBYCTTTGATCTYN
SELEX
Jolma et al.(2013)
LEF1_1
0.741 0.986
LEF1
M05771_2.00
Homo sapiens
NSATCAAAS

STTTGATSN
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1
0.741 0.986
LEF1
M05772_2.00
Homo sapiens
WCATCGRGRCGCTGW

WCAGCGYCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2
0.741 0.986
LEF1
M05775_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1
0.741 0.986
LEF1
M05776_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2
0.741 0.986
LEF1
M05895_2.00
Homo sapiens
WTCAAAGNNN

NNNCTTTGAW
SMiLE-seq
Isakova et al.(2017)
LEF1
0.741 0.986
LEF1
M09392_2.00
Homo sapiens
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A
0.741 0.986
Lef1
M09402_2.00
Mus musculus
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B
0.741 0.986
LEF1
M11311_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q2_01
0.741 0.986
LEF1
M11312_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q3
0.741 0.986
LEF1
M11313_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q4
0.741 0.986
LEF1
M11314_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5_01
0.741 0.986
LEF1
M11315_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5
0.741 0.986
LEF1
M05773_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1
0.741 0.986
LEF1
M05774_2.00
Homo sapiens
WCATCGRGGCGCTGW

WCAGCGCCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2
0.741 0.986
LEF1
M05777_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1
0.741 0.986
LEF1
M05778_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2
0.741 0.986
Tcf7l1
M00207_2.00
Mus musculus
NNNNWWDN

NHWWNNNN
PBM
Badis et al.(2009)
Tcf3_3787
0.741 0.928
TCF7L1
M03512_2.00
Homo sapiens
AAAGATCAAAGG

CCTTTGATCTTT
SELEX
Jolma et al.(2013)
TCF7L1_1
0.741 0.928
TCF7L1
M05779_2.00
Homo sapiens
RSATCAAAG

CTTTGATSY
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1
0.741 0.928
TCF7L1
M05780_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2
0.741 0.928
TCF7L1
M09395_2.00
Homo sapiens
NBBCTTTGAWSTB

VASWTCAAAGVVN
Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B
0.741 0.928
Tcf7l1
M09406_2.00
Mus musculus
BBCTTTGAWST

ASWTCAAAGVV
Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A
0.741 0.928
Tcf7l1
M09407_2.00
Mus musculus
NDGCAGSTGBB

VVCASCTGCHN
Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A
0.741 0.928
TCF7L1
M11320_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_01
0.741 0.928
TCF7L1
M11321_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6_01
0.741 0.928
TCF7L1
M11322_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6
0.741 0.928
TCF7L1
M05781_2.00
Homo sapiens
CTTTGATSY

RSATCAAAG
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1
0.741 0.928
TCF7L1
M05782_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2
0.741 0.928
pan
M06451_2.00
Drosophila melanogaster
DWYCAAAD

HTTTGRWH
B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432
0.720 0.928
pan
M08428_2.00
Drosophila melanogaster
WHNAAAVRNRSCGM

KCGSYNYBTTTNDW
ChIP-chip
Mathelier et al.(2014)
MA0237.2
0.720 0.928
pan
M11337_2.00
Drosophila melanogaster
AAGATCAAAGG

CCTTTGATCTT
Transfac
Matys et al.(2006)
I$TCF_1
0.720 0.928
pan
M11338_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TCF_Q6
0.720 0.928
Tcf7
M00193_2.00
Mus musculus
HNHNNNNNN

NNNNNNDND
PBM
Badis et al.(2009)
Tcf7_0950
0.716 0.986
Tcf7
M03532_2.00
Mus musculus
AAASATCAAAGV

BCTTTGATSTTT
SELEX
Jolma et al.(2013)
Tcf7_1
0.716 0.986
TCF7
M05755_2.00
Homo sapiens
DSATCAAWS

SWTTGATSH
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1
0.716 0.986
TCF7
M05756_2.00
Homo sapiens
WCWKCGYCYCGWTGW

WCAWCGRGRCGMWGW
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2
0.716 0.986
TCF7
M05890_2.00
Homo sapiens
NNASATCAAASNN

NNSTTTGATSTNN
SMiLE-seq
Isakova et al.(2017)
TCF7
0.716 0.986
TCF7
M09386_2.00
Homo sapiens
NBBCTTTSAWSTBNBN

NVNVASWTSAAAGVVN
Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A
0.716 0.986
Tcf7
M09400_2.00
Mus musculus
VVRVADSAAARVVVNV

BNBBBYTTTSHTBYBB
Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A
0.716 0.986
TCF7
M11294_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5_01
0.716 0.986
TCF7
M11295_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5
0.716 0.986
TCF7
M05757_2.00
Homo sapiens
RSATCAAAS

STTTGATSY
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1
0.716 0.986
TCF7
M05758_2.00
Homo sapiens
WCAWCGRGRCGMWGW

WCWKCGYCYCGWTGW
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2
0.716 0.986
pop-1
M00712_2.00
Caenorhabditis elegans
NNHDWVNNNN

NNNNBWHDNN
PBM
Narasimhan et al.(2015)
pTH9135
0.515 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000014783 Sox 333 401

Links

Other Sox family TFs
Other Xiphophorus maculatus TFs

512 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28582.m000316 Ricinus communis 28582.m000316 N 0.000
28582.m000317 Ricinus communis 28582.m000317 N 0.000
28582.m000318 Ricinus communis 28582.m000318 N 0.000
30226.m001993 Ricinus communis 30226.m001993 N 0.000
AMTR_s00022p00190540 Amborella trichopoda AMTR_s00022p00190540 I 0.000
AMTR_s00025p00224230 Amborella trichopoda AMTR_s00025p00224230 I 0.000
Aquca_004_00369 Aquilegia coerulea Aquca_004_00369 I 0.000
Aquca_009_00165 Aquilegia coerulea Aquca_009_00165 N 0.000
Aquca_012_00204 Aquilegia coerulea Aquca_012_00204 N 0.000
AT5G06800 Arabidopsis thaliana AT5G06800 N 0.000
BGIOSGA014151 Oryza indica BGIOSGA014151 I 0.000
Bo2g007410 Brassica oleracea Bo2g007410 N 0.000
Bo3g004040 Brassica oleracea Bo3g004040 N 0.000
Bo9g175820 Brassica oleracea Bo9g175820 I 0.000
Bostr.13129s0292 Boechera stricta Bostr.13129s0292 N 0.000
Bra005912 Brassica rapa Bra005912 N 0.000
Bra009228 Brassica rapa Bra009228 I 0.000
Bra028717 Brassica rapa Bra028717 N 0.000
BRADI5G25320 Brachypodium distachyon BRADI5G25320 I 0.000
Cagra.8005s0016 Capsella grandiflora Cagra.8005s0016 N 0.000
Carubv10003217m.g Capsella rubella Carubv10003217m.g N 0.000
cassava12253.valid.m1 Manihot esculenta cassava12253.valid.m1 N 0.000
cassava12254.valid.m1 Manihot esculenta cassava12254.valid.m1 N 0.000
cassava12255.valid.m1 Manihot esculenta cassava12255.valid.m1 N 0.000
cassava16780.m1 Manihot esculenta cassava16780.m1 I 0.000
cassava39743.m1 Manihot esculenta cassava39743.m1 N 0.000
Ca_07304 Cicer arietinum Ca_07304 I 0.000
Ca_14198 Cicer arietinum Ca_14198 N 0.000
chr1.LjB18K24.110.nd Lotus japonicus chr1.LjB18K24.110.nd I 0.000
chr1.LjT38A19.30.nc Lotus japonicus chr1.LjT38A19.30.nc N 0.000
chr5.LjT42I01.50.nd Lotus japonicus chr5.LjT42I01.50.nd I 0.000
Ciclev10012014m.g Citrus clementina Ciclev10012014m.g N 0.000
Ciclev10015819m.g Citrus clementina Ciclev10015819m.g I 0.000
Ciclev10033388m.g Citrus clementina Ciclev10033388m.g N 0.000
Cla011853 Citrullus lanatus Cla011853 N 0.000
Cucsa.353890 Cucumis sativus Cucsa.353890 N 0.000
estExt_fgenesh1_pg.C_1660037 Physcomitrella patens estExt_fgenesh1_pg.C_1660037 I 0.000
estExt_fgenesh1_pg.C_550102 Physcomitrella patens estExt_fgenesh1_pg.C_550102 I 0.000
est_orfs.1_306_4269596:1 Micromonas pusilla est_orfs.1_306_4269596:1 I 0.000
Eucgr.A00517 Eucalyptus grandis Eucgr.A00517 I 0.000
Eucgr.A02444 Eucalyptus grandis Eucgr.A02444 N 0.000
evm.TU.supercontig_85.82 Carica papaya evm.TU.supercontig_85.82 N 0.000
fgenesh2_kg.6__627__AT5G06800.1 Arabidopsis lyrata fgenesh2_kg.6__627__AT5G06800.1 N 0.000
fgenesh2_pg.scaffold_82000058 Physcomitrella patens fgenesh2_pg.scaffold_82000058 I 0.000
gene22647-v1.0-hybrid Fragaria vesca gene22647-v1.0-hybrid N 0.000
GLYMA02G30800 Glycine max GLYMA02G30800 N 0.000
GLYMA03G29940 Glycine max GLYMA03G29940 I 0.000
GLYMA09G17404 Glycine max GLYMA09G17404 N 0.000
GLYMA18G43130 Glycine max GLYMA18G43130 I 0.000
GLYMA19G32850 Glycine max GLYMA19G32850 I 0.000
Gorai.001G225500 Gossypium raimondii Gorai.001G225500 N 0.000
Gorai.006G142000 Gossypium raimondii Gorai.006G142000 N 0.000
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I 0.000
GRMZM2G124495 Zea mays GRMZM2G124495 I 0.000
GSMUA_Achr4G19300_001 Musa acuminata GSMUA_Achr4G19300_001 I 0.000
GSMUA_Achr7G06370_001 Musa acuminata GSMUA_Achr7G06370_001 I 0.000
LPERR04G24240 Leersia perrieri LPERR04G24240 I 0.000
Lus10021035.g Linum usitatissimum Lus10021035.g N 0.000
Lus10022886.g Linum usitatissimum Lus10022886.g I 0.000
Lus10023816.g Linum usitatissimum Lus10023816.g N 0.000
MDP0000142146 Malus domestica MDP0000142146 I 0.000
MDP0000182154 Malus domestica MDP0000182154 I 0.000
MDP0000184307 Malus domestica MDP0000184307 N 0.000
MDP0000253656 Malus domestica MDP0000253656 N 0.000
MDP0000280005 Malus domestica MDP0000280005 N 0.000
mgf007532m Mimulus guttatus mgf007532m N 0.000
mgf007985m Mimulus guttatus mgf007985m N 0.000
mgf015795m Mimulus guttatus mgf015795m N 0.000
mgf017208m Mimulus guttatus mgf017208m N 0.000
MTR_1g053835 Medicago truncatula MTR_1g053835 N 0.000
MTR_7g068600 Medicago truncatula MTR_7g068600 N 0.000
MTR_7g093030 Medicago truncatula MTR_7g093030 N 0.000
OB04G35670 Oryza brachyantha OB04G35670 I 0.000
OBART04G28680 Oryza barthii OBART04G28680 I 0.000
OGLUM04G28560 Oryza glumaepatula OGLUM04G28560 I 0.000
OLONG_005000 Oryza longistaminata OLONG_005000 I 0.000
OMERI04G24260 Oryza meridionalis OMERI04G24260 I 0.000
ONIVA04G27220 Oryza nivara ONIVA04G27220 I 0.000
OPUNC04G26200 Oryza punctata OPUNC04G26200 I 0.000
orange1.1g018583m.g Citrus sinensis orange1.1g018583m.g N 0.000
orange1.1g035950m.g Citrus sinensis orange1.1g035950m.g N 0.000
orange1.1g038268m.g Citrus sinensis orange1.1g038268m.g I 0.000
ORGLA04G0249600 Oryza glaberrima ORGLA04G0249600 I 0.000
ORUFI04G30350 Oryza rufipogon ORUFI04G30350 I 0.000
OS04G0665600 Oryza sativa OS04G0665600 I 0.000
Pavir.Ga00160 Panicum virgatum Pavir.Ga00160 I 0.000
Pavir.J05593 Panicum virgatum Pavir.J05593 I 0.000
PDK_20s1349221g001 Phoenix dactylifera PDK_20s1349221g001 N 0.000
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N 0.000
PGSC0003DMG400023674 Solanum tuberosum PGSC0003DMG400023674 N 0.000
PK00827.1 Cannabis sativa PK00827.1 N 0.000
Pm025973 Prunus mume Pm025973 N 0.000
POPTR_0001s23560 Populus trichocarpa POPTR_0001s23560 N 0.000
POPTR_0006s20540 Populus trichocarpa POPTR_0006s20540 N 0.000
POPTR_0016s04830 Populus trichocarpa POPTR_0016s04830 N 0.000
PRUPE_ppa016067mg Prunus persica PRUPE_ppa016067mg N 0.000
SapurV1A.0008s0360 Salix purpurea SapurV1A.0008s0360 N 0.000
SapurV1A.0018s0530 Salix purpurea SapurV1A.0018s0530 N 0.000
SapurV1A.0251s0040 Salix purpurea SapurV1A.0251s0040 N 0.000
SapurV1A.4156s0010 Salix purpurea SapurV1A.4156s0010 N 0.000
Sb05g000480 Sorghum bicolor Sb05g000480 I 0.000
Sb06g031970 Sorghum bicolor Sb06g031970 I 0.000
SELMODRAFT_414222 Selaginella moellendorffii SELMODRAFT_414222 I 0.000
SELMODRAFT_422768 Selaginella moellendorffii SELMODRAFT_422768 I 0.000
SELMODRAFT_426960 Selaginella moellendorffii SELMODRAFT_426960 I 0.000
SELMODRAFT_438636 Selaginella moellendorffii SELMODRAFT_438636 I 0.000
Si022099m.g Setaria italica Si022099m.g I 0.000
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I 0.000
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N 0.000
Solyc10g080460.1 Solanum lycopersicum Solyc10g080460.1 N 0.000
TCM_024886 Theobroma cacao TCM_024886 N 0.000
Thhalv10013850m.g Eutrema salsugineum Thhalv10013850m.g N 0.000
VIT_08s0007g06180 Vitis vinifera VIT_08s0007g06180 I 0.000
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I 0.000
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I 0.000
VIT_13s0156g00390 Vitis vinifera VIT_13s0156g00390 I 0.000