TFAM (Drosophila melanogaster)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 FBgn0038805 T329517_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TFAM
M11336_2.00
Drosophila melanogaster
KNMTTATCVNH

DNBGATAAKNM
Transfac
Matys et al.(2006)
I$MTTFA_01
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0083355 Sox 51 119
FBpp0083355 Sox 156 223
FBpp0083356 Sox 78 146
FBpp0083356 Sox 183 250

Links

Other Sox family TFs
Other Drosophila melanogaster TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.000
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.000
fgenesh1_pg.C_scaffold_4002383 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002383 N 0.000
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.000
LBD14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001244 N 0.000
LBD14 Arabidopsis thaliana AT2G31310 N 0.000
LBD17 Arabidopsis thaliana AT2G42440 N 0.000
LBD29 Arabidopsis thaliana AT3G58190 I 0.000
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.000
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 0.000
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.000
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.000
Bo4g052270 Brassica oleracea Bo4g052270 N 0.000
Bo4g108600 Brassica oleracea Bo4g108600 I 0.000
Bo4g191540 Brassica oleracea Bo4g191540 N 0.000
Bo8g092560 Brassica oleracea Bo8g092560 I 0.000
Bra018260 Brassica rapa Bra018260 N 0.000
Bra016876 Brassica rapa Bra016876 N 0.000
Bra014581 Brassica rapa Bra014581 I 0.000
Bra007385 Brassica rapa Bra007385 N 0.000
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.000
Cagra.6952s0010 Capsella grandiflora Cagra.6952s0010 N 0.000
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.000
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.000
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.000
Ca_07763 Cicer arietinum Ca_07763 I 0.000
Ca_12214 Cicer arietinum Ca_12214 I 0.000
Cla015094 Citrullus lanatus Cla015094 I 0.000
Cla006087 Citrullus lanatus Cla006087 I 0.000
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.000
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.000
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.000
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.000
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.000
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.000
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.000
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.000
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.000
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.000
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.000
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.000
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.000
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.000
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.000
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.000
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.000
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.000
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.000
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.000
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.000
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.000
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.000
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.000
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.000
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.000
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.000
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.000
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.000
mgf020773m Mimulus guttatus mgf020773m I 0.000
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.000
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.000
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.000
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.000
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.000
OBART03G03830 Oryza barthii OBART03G03830 I 0.000
OBART08G23860 Oryza barthii OBART08G23860 I 0.000
OB03G13890 Oryza brachyantha OB03G13890 I 0.000
OB08G30680 Oryza brachyantha OB08G30680 I 0.000
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.000
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.000
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.000
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.000
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.000
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.000
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.000
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.000
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.000
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.000
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.000
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.000
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.000
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.000
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.000
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.000
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.000
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.000
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.000
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.000
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.000
OS02G0820500 Oryza sativa OS02G0820500 I 0.000
OS03G0149100 Oryza sativa OS03G0149100 I 0.000
OS08G0563400 Oryza sativa OS08G0563400 I 0.000
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.000
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.000
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.000
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.000
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.000
Pm020627 Prunus mume Pm020627 I 0.000
Pm020628 Prunus mume Pm020628 I 0.000
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.000
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.000
28428.m000040 Ricinus communis 28428.m000040 I 0.000
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.000
Si015156m.g Setaria italica Si015156m.g I 0.000
Si040019m.g Setaria italica Si040019m.g I 0.000
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.000
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.000
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.000
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.000
TCM_004103 Theobroma cacao TCM_004103 I 0.000
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.000
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.000