CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GYMLUDRAFT_162520
(
Gymnopus luxurians
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
GYMLUDRAFT_162520
T330462_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.498
0.406
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.498
0.406
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.498
0.406
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.498
0.406
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.498
0.406
SRY
M03525_2.00
Homo sapiens
AACAATANCATTGTT
AACAATGNTATTGTT
SELEX
Jolma et al.(2013)
SRY_1
0.422
0.333
SRY
M03526_2.00
Homo sapiens
AACAATHHNCATTGTT
AACAATGNDDATTGTT
SELEX
Jolma et al.(2013)
SRY_2
0.422
0.333
SRY
M03527_2.00
Homo sapiens
TCAATAMCATTGA
TCAATGKTATTGA
SELEX
Jolma et al.(2013)
SRY_3
0.422
0.333
SRY
M03528_2.00
Homo sapiens
TGAATANCATTCA
TGAATGNTATTCA
SELEX
Jolma et al.(2013)
SRY_4
0.422
0.333
SRY
M05898_2.00
Homo sapiens
NACAATNV
BNATTGTN
SMiLE-seq
Isakova et al.(2017)
SRY
0.422
0.333
SRY
M02717_2.00
Homo sapiens
NDWAACAAW
WTTGTWWHN
SELEX
Mathelier et al.(2014)
MA0084.1
0.422
0.333
SRY
M09398_2.00
Homo sapiens
BWTTGTTWH
DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_HUMAN.H11MO.0.B
0.422
0.333
SRY
M11331_2.00
Homo sapiens
AAWSWMM
KKWSWTT
Transfac
Matys et al.(2006)
V$SRY_01
0.422
0.333
SRY
M11332_2.00
Homo sapiens
HBHWTTGTTWDN
NHWAACAAWDVD
Transfac
Matys et al.(2006)
V$SRY_02
0.422
0.333
SRY
M11333_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRY_Q6
0.422
0.333
SOX4
M01026_2.00
Homo sapiens
AACAAWGR
YCWTTGTT
PBM
Scharer et al.(2009)
Sox4
0.416
0.391
Sox11
M00210_2.00
Mus musculus
WTTGTBNNN
NNNVACAAW
PBM
Badis et al.(2009)
Sox11_2266
0.416
0.391
Sox4
M00213_2.00
Mus musculus
NNVACAAWD
HWTTGTBNN
PBM
Badis et al.(2009)
Sox4_2941
0.416
0.391
SOX4
M03496_2.00
Homo sapiens
NAACAATTKCAGTGTT
AACACTGMAATTGTTN
SELEX
Jolma et al.(2013)
SOX4_1
0.416
0.391
Sox11
M03541_2.00
Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT
SELEX
Jolma et al.(2013)
Sox11_1
0.416
0.391
SOX4
M05765_2.00
Homo sapiens
NRACAAWGVV
BBCWTTGTYN
SELEX
Yin et al.(2017)
SOX4_eDBD_HT-SELEX
0.416
0.391
SOX4
M09388_2.00
Homo sapiens
BYCTTTGTYYBB
VVRRACAAAGRV
Misc
Kulakovskiy et al.(2013)
SOX4_HUMAN.H11MO.0.B
0.416
0.391
Sox4
M09410_2.00
Mus musculus
BYCTTTGTYYBB
VVRRACAAAGRV
Misc
Kulakovskiy et al.(2013)
SOX4_MOUSE.H11MO.0.A
0.416
0.391
Sox4
M09641_2.00
Mus musculus
BCWTTGTYCN
NGRACAAWGV
Misc
Heinz et al.(2010)
proB-Sox4_GSE50066
0.416
0.391
SOX11
M11326_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX11_Q6
0.416
0.391
SOX4
M11301_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q3
0.416
0.391
SOX4
M11302_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q5_02
0.416
0.391
SOX4
M11303_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX4_Q5
0.416
0.391
SOX4
M05766_2.00
Homo sapiens
NRACAAWGVV
BBCWTTGTYN
SELEX
Yin et al.(2017)
SOX4_eDBD_Methyl-HT-SELEX
0.416
0.391
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KIK63578
Sox
24
93
IPRPPNPFMLFRSYMLKKKTIPESVEKRQQQLSKVIGQCWNLLPPEEKQPWIDEAARLRREHQLMYPGYK
Links
Other
Sox
family TFs
Other
Gymnopus luxurians
TFs
447 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy