CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HETIRDRAFT_439796
(
Heterobasidion irregulare
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
HETIRDRAFT_439796
T330589_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
INO
M02485_2.00
Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN
PBM
Weirauch et al.(2014)
pTH7516
0.460
0.306
YAB5
M02486_2.00
Arabidopsis thaliana
NNNNHRN
NYDNNNN
PBM
Weirauch et al.(2014)
pTH7575
0.440
0.265
YAB5
M00889_2.00
Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN
PBM
Franco-Zorrilla et al.(2014)
YAB5
0.440
0.265
YAB1
M00890_2.00
Arabidopsis thaliana
AATAATWA
TWATTATT
PBM
Franco-Zorrilla et al.(2014)
YAB1
0.440
0.265
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ETW83468
Sox
31
79
PKRAPSAYNLFVQANMKPWLEANQGKSVKEAMAQIGSMWKDAPENPNRG
Links
Other
Sox
family TFs
Other
Heterobasidion irregulare
TFs
336 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy