POSPLDRAFT_98507 (Postia placenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POSPLDRAFT_98507 T332164_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
bbx
M03975_2.00
Drosophila melanogaster
NAACAATDNCATTGTTN

NAACAATGNHATTGTTN
SELEX
Nitta et al.(2015)
bbx_1
0.439 0.275
BBX
M05763_2.00
Homo sapiens
TGAWCDNYGWTCA

TGAWCRNHGWTCA
SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX
0.421 0.304
BBX
M05764_2.00
Homo sapiens
TGAACDNYGTTCA

TGAACRNHGTTCA
SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX
0.421 0.304
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EED82531 Sox 110 180

Links

Other Sox family TFs
Other Postia placenta TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29843.m000288 Ricinus communis 29843.m000288 N 0.000
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N 0.000
Bo8g030620 Brassica oleracea Bo8g030620 N 0.000
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N 0.000
Bra038936 Brassica rapa Bra038936 N 0.000
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N 0.000
Ca_15552 Cicer arietinum Ca_15552 N 0.000
Ca_15553 Cicer arietinum Ca_15553 N 0.000
chr2.CM0373.530.nc Lotus japonicus chr2.CM0373.530.nc N 0.000
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N 0.000
Cla005887 Citrullus lanatus Cla005887 N 0.000
Cucsa.209330 Cucumis sativus Cucsa.209330 N 0.000
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N 0.000
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N 0.000
gene12231-v1.0-hybrid Fragaria vesca gene12231-v1.0-hybrid N 0.000
GLYMA01G00520 Glycine max GLYMA01G00520 N 0.000
GLYMA07G15620 Glycine max GLYMA07G15620 N 0.000
Gorai.009G001500 Gossypium raimondii Gorai.009G001500 N 0.000
GSMUA_Achr1G23690_001 Musa acuminata GSMUA_Achr1G23690_001 N 0.000
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N 0.000
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N 0.000
Lus10017146.g Linum usitatissimum Lus10017146.g N 0.000
Lus10021593.g Linum usitatissimum Lus10021593.g N 0.000
MBD02 Vitis vinifera VIT_11s0065g01010 N 0.000
MBD02 Arabidopsis lyrata scaffold_703403.1 N 0.000
MBD2 Arabidopsis thaliana AT5G35330 N 0.000
MDP0000222923 Malus domestica MDP0000222923 N 0.000
mgf002635m Mimulus guttatus mgf002635m N 0.000
MTR_6g093020 Medicago truncatula MTR_6g093020 N 0.000
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N 0.000
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N 0.000
Pm008965 Prunus mume Pm008965 N 0.000
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N 0.000
POPTR_0018s14340 Populus trichocarpa POPTR_0018s14340 N 0.000
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N 0.000
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N 0.000
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N 0.000
TCM_039691 Theobroma cacao TCM_039691 N 0.000
Thhalv10003457m.g Eutrema salsugineum Thhalv10003457m.g N 0.000