Si014434m.g (Setaria italica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Si014434m.g T332543_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Si014434m Sox 94 158

Links

Other Sox family TFs
Other Setaria italica TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.440
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.532
TCM_007659 Theobroma cacao TCM_007659 I 0.531
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.505
Si007288m.g Setaria italica Si007288m.g I 0.417
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.612
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.595
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.546
OS08G0101100 Oryza sativa OS08G0101100 I 0.569
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.569
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.569
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.569
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.569
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.569
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.532
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.532
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.532
PK03866.1 Cannabis sativa PK03866.1 I 0.522
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.595
MDP0000205665 Malus domestica MDP0000205665 I 0.602
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.568
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.494
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.463
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.463
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.507
30131.m007272 Ricinus communis 30131.m007272 I 0.516
Pm006054 Prunus mume Pm006054 I 0.612
Cla009222 Citrullus lanatus Cla009222 I 0.507
Ca_05351 Cicer arietinum Ca_05351 I 0.421
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.533
OBART08G00070 Oryza barthii OBART08G00070 I 0.569
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.440
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.569
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.447
Bra029371 Brassica rapa Bra029371 I 0.531
Bra026498 Brassica rapa Bra026498 I 0.473
Bo9g014140 Brassica oleracea Bo9g014140 I 0.473
Bo2g160920 Brassica oleracea Bo2g160920 I 0.531
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.569
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.464
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.444
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.440
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.463
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.529
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.538
OB08G10120 Oryza brachyantha OB08G10120 N 0.550
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.520
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.418
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.466
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.643
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.418
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.538
OB04G28810 Oryza brachyantha OB04G28810 N 0.418
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.553
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.480
AAEL002381 Aedes aegypti AAEL002381 N 0.424
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.440
MDOA007633 Musca domestica MDOA007633 N 0.437
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.571
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.465
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.466
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.679
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.428
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.418
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.440
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.512
GH21151 Drosophila grimshawi FBgn0128613 N 0.430
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.463
mgf009124m Mimulus guttatus mgf009124m N 0.444
GJ21774 Drosophila virilis FBgn0208892 N 0.437
GE11532 Drosophila yakuba FBgn0229332 N 0.437
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.433
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.675
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.418
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.418
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.671
OBART04G21800 Oryza barthii OBART04G21800 N 0.418
OS04G0564600 Oryza sativa OS04G0564600 N 0.418
HMEL015307 Heliconius melpomene HMEL015307 N 0.418
GD25013 Drosophila simulans FBgn0196325 N 0.437
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.507
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.436
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.418
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.418
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.417
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.418
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.428
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.428
Ssrp Drosophila melanogaster FBgn0010278 N 0.437
GF12460 Drosophila ananassae FBgn0089497 N 0.437
GG19998 Drosophila erecta FBgn0112197 N 0.437
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.418