Ca_05351 (Cicer arietinum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ca_05351 T333589_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY

RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.635 0.623
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_05351 Sox 102 171

Links

Other Sox family TFs
Other Cicer arietinum TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10015363m.g Capsella rubella Carubv10015363m.g N 0.000
mgf021653m Mimulus guttatus mgf021653m N 0.000
mgf017960m Mimulus guttatus mgf017960m N 0.000
mgf011656m Mimulus guttatus mgf011656m N 0.000
mgf010898m Mimulus guttatus mgf010898m N 0.000
Cucsa.283560 Cucumis sativus Cucsa.283560 N 0.000
Cucsa.199060 Cucumis sativus Cucsa.199060 N 0.000
Cucsa.031350 Cucumis sativus Cucsa.031350 N 0.000
cassava6185.valid.m1 Manihot esculenta cassava6185.valid.m1 N 0.000
Aquca_026_00293 Aquilegia coerulea Aquca_026_00293 N 0.000
Bostr.1460s0172 Boechera stricta Bostr.1460s0172 N 0.000
Bostr.26959s0040 Boechera stricta Bostr.26959s0040 N 0.000
Carubv10002654m.g Capsella rubella Carubv10002654m.g N 0.000
Carubv10000015m.g Capsella rubella Carubv10000015m.g N 0.000
Cagra.6845s0054 Capsella grandiflora Cagra.6845s0054 N 0.000
Cagra.6164s0006 Capsella grandiflora Cagra.6164s0006 N 0.000
Cagra.3364s0006 Capsella grandiflora Cagra.3364s0006 N 0.000
Cagra.1194s0049 Capsella grandiflora Cagra.1194s0049 N 0.000
Bostr.2902s0344 Boechera stricta Bostr.2902s0344 N 0.000
Bostr.26959s0198 Boechera stricta Bostr.26959s0198 N 0.000
cassava60.valid.m1 Manihot esculenta cassava60.valid.m1 N 0.000
cassava43296.valid.m1 Manihot esculenta cassava43296.valid.m1 N 0.000
VIT_01s0011g03530 Vitis vinifera VIT_01s0011g03530 N 0.000
Traes_4DL_E0847FBC5 Triticum aestivum Traes_4DL_E0847FBC5 N 0.000
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N 0.000
Traes_4BL_7F70575F9 Triticum aestivum Traes_4BL_7F70575F9 N 0.000
TRAES3BF008600030CFD_g Triticum aestivum TRAES3BF008600030CFD_g N 0.000
TRAES3BF008500030CFD_g Triticum aestivum TRAES3BF008500030CFD_g N 0.000
Traes_2DL_9D8B5B436 Triticum aestivum Traes_2DL_9D8B5B436 N 0.000
Traes_2BL_3A840DB921 Triticum aestivum Traes_2BL_3A840DB921 N 0.000
VIT_01s0011g03540 Vitis vinifera VIT_01s0011g03540 N 0.000
VIT_14s0006g02950 Vitis vinifera VIT_14s0006g02950 N 0.000
VIT_17s0000g03720 Vitis vinifera VIT_17s0000g03720 N 0.000
cassava38982.m1 Manihot esculenta cassava38982.m1 N 0.000
28207.m000107 Ricinus communis 28207.m000107 N 0.000
27524.m000293 Ricinus communis 27524.m000293 N 0.000
Pm029059 Prunus mume Pm029059 N 0.000
Cla020705 Citrullus lanatus Cla020705 N 0.000
Cla019264 Citrullus lanatus Cla019264 N 0.000
Cla007208 Citrullus lanatus Cla007208 N 0.000
Ca_22996 Cicer arietinum Ca_22996 N 0.000
Traes_2AL_450404EA6 Triticum aestivum Traes_2AL_450404EA6 N 0.000
Carubv10021721m.g Capsella rubella Carubv10021721m.g N 0.000
LjSGA_023437.1 Lotus japonicus LjSGA_023437.1 N 0.000
Pavir.J11724 Panicum virgatum Pavir.J11724 N 0.000
Pavir.J01483 Panicum virgatum Pavir.J01483 N 0.000
Pavir.J00526 Panicum virgatum Pavir.J00526 N 0.000
Pavir.Eb02390 Panicum virgatum Pavir.Eb02390 N 0.000
Pavir.Ea01295 Panicum virgatum Pavir.Ea01295 N 0.000
Pavir.Ea00650 Panicum virgatum Pavir.Ea00650 N 0.000
orange1.1g045357m.g Citrus sinensis orange1.1g045357m.g N 0.000
orange1.1g038007m.g Citrus sinensis orange1.1g038007m.g N 0.000
SapurV1A.0078s0410 Salix purpurea SapurV1A.0078s0410 N 0.000
SapurV1A.0079s0150 Salix purpurea SapurV1A.0079s0150 N 0.000
SapurV1A.0315s0090 Salix purpurea SapurV1A.0315s0090 N 0.000
chr1.LjT23D08.90.nc Lotus japonicus chr1.LjT23D08.90.nc N 0.000
PK04625.1 Cannabis sativa PK04625.1 N 0.000
PK04548.1 Cannabis sativa PK04548.1 N 0.000
PK03169.1 Cannabis sativa PK03169.1 N 0.000
Thhalv10021328m.g Eutrema salsugineum Thhalv10021328m.g N 0.000
Thhalv10019494m.g Eutrema salsugineum Thhalv10019494m.g N 0.000
Thhalv10019048m.g Eutrema salsugineum Thhalv10019048m.g N 0.000
SapurV1A.0851s0010 Salix purpurea SapurV1A.0851s0010 N 0.000
orange1.1g022591m.g Citrus sinensis orange1.1g022591m.g N 0.000
MDP0000233303 Malus domestica MDP0000233303 N 0.000
Eucgr.K02222 Eucalyptus grandis Eucgr.K02222 N 0.000
Eucgr.J01501 Eucalyptus grandis Eucgr.J01501 N 0.000
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N 0.000
Eucgr.F02492 Eucalyptus grandis Eucgr.F02492 N 0.000
Eucgr.B03016 Eucalyptus grandis Eucgr.B03016 N 0.000
Ciclev10022068m.g Citrus clementina Ciclev10022068m.g N 0.000
Ciclev10016422m.g Citrus clementina Ciclev10016422m.g N 0.000
Ciclev10013705m.g Citrus clementina Ciclev10013705m.g N 0.000
evm.TU.supercontig_1.42 Carica papaya evm.TU.supercontig_1.42 N 0.000
evm.TU.supercontig_282.15 Carica papaya evm.TU.supercontig_282.15 N 0.000
evm.TU.supercontig_3.514 Carica papaya evm.TU.supercontig_3.514 N 0.000
MDP0000136037 Malus domestica MDP0000136037 N 0.000
Lus10028470.g Linum usitatissimum Lus10028470.g N 0.000
Gorai.008G056000 Gossypium raimondii Gorai.008G056000 N 0.000
Gorai.006G061200 Gossypium raimondii Gorai.006G061200 N 0.000
Gorai.005G190300 Gossypium raimondii Gorai.005G190300 N 0.000
Gorai.002G217800 Gossypium raimondii Gorai.002G217800 N 0.000
gene10300-v1.0-hybrid Fragaria vesca gene10300-v1.0-hybrid N 0.000
gene03741-v1.0-hybrid Fragaria vesca gene03741-v1.0-hybrid N 0.000
Carubv10022391m.g Capsella rubella Carubv10022391m.g N 0.000
TCM_019459 Theobroma cacao TCM_019459 N 0.000
MTR_6g018270 Medicago truncatula MTR_6g018270 N 0.000
GSMUA_Achr2G22720_001 Musa acuminata GSMUA_Achr2G22720_001 N 0.000
GSMUA_Achr2G14600_001 Musa acuminata GSMUA_Achr2G14600_001 N 0.000
GRMZM2G386674 Zea mays GRMZM2G386674 N 0.000
GRMZM2G132693 Zea mays GRMZM2G132693 N 0.000
GRMZM2G073044 Zea mays GRMZM2G073044 N 0.000
GRMZM2G060544 Zea mays GRMZM2G060544 N 0.000
GLYMA20G24950 Glycine max GLYMA20G24950 N 0.000
GLYMA19G06280 Glycine max GLYMA19G06280 N 0.000
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N 0.000
GSMUA_Achr4G03700_001 Musa acuminata GSMUA_Achr4G03700_001 N 0.000
GSMUA_Achr4G06820_001 Musa acuminata GSMUA_Achr4G06820_001 N 0.000
MLOC_58304 Hordeum vulgare MLOC_58304 N 0.000
LPERR07G17900 Leersia perrieri LPERR07G17900 N 0.000
LPERR01G15290 Leersia perrieri LPERR01G15290 N 0.000
LPERR01G01830 Leersia perrieri LPERR01G01830 N 0.000
GSMUA_AchrUn_randomG00460_001 Musa acuminata GSMUA_AchrUn_randomG00460_001 N 0.000
GSMUA_Achr9G21360_001 Musa acuminata GSMUA_Achr9G21360_001 N 0.000
GSMUA_Achr9G00580_001 Musa acuminata GSMUA_Achr9G00580_001 N 0.000
GSMUA_Achr4G13790_001 Musa acuminata GSMUA_Achr4G13790_001 N 0.000
GLYMA18G53440 Glycine max GLYMA18G53440 N 0.000
GLYMA13G07590 Glycine max GLYMA13G07590 N 0.000
Bo1g156310 Brassica oleracea Bo1g156310 N 0.000
BGIOSGA002703 Oryza indica BGIOSGA002703 N 0.000
BGIOSGA001546 Oryza indica BGIOSGA001546 N 0.000
LBD41 Arabidopsis thaliana AT3G02550 N 0.000
LBD42 Arabidopsis thaliana AT1G68510 N 0.000
LBD40 Arabidopsis thaliana AT1G67100 N 0.000
AMTR_s00079p00088960 Amborella trichopoda AMTR_s00079p00088960 N 0.000
LBD40 Arabidopsis lyrata Al_scaffold_0002_1337 N 0.000
Bo2g055410 Brassica oleracea Bo2g055410 N 0.000
Bo3g055690 Brassica oleracea Bo3g055690 N 0.000
Bo6g106960 Brassica oleracea Bo6g106960 N 0.000
GLYMA08G48040 Glycine max GLYMA08G48040 N 0.000
GLYMA08G31143 Glycine max GLYMA08G31143 N 0.000
LBD41 Arabidopsis lyrata fgenesh2_kg.3__191__AT3G02550.1 N 0.000
LBD42 Arabidopsis lyrata fgenesh2_kg.2__1100__AT1G68510.1 N 0.000
BRADI4G16750 Brachypodium distachyon BRADI4G16750 N 0.000
BRADI4G16740 Brachypodium distachyon BRADI4G16740 N 0.000
Bra021433 Brassica rapa Bra021433 N 0.000
Bra004315 Brassica rapa Bra004315 N 0.000
AC234149.1_FG002 Zea mays AC234149.1_FG002 N 0.000
MTR_7g007010 Medicago truncatula MTR_7g007010 N 0.000
TCM_012338 Theobroma cacao TCM_012338 N 0.000
Sb09g025700 Sorghum bicolor Sb09g025700 N 0.000
Sb03g007270 Sorghum bicolor Sb03g007270 N 0.000
Sb01g032580 Sorghum bicolor Sb01g032580 N 0.000
PRUPE_ppa011233mg Prunus persica PRUPE_ppa011233mg N 0.000
PRUPE_ppa009213mg Prunus persica PRUPE_ppa009213mg N 0.000
POPTR_0012s05340 Populus trichocarpa POPTR_0012s05340 N 0.000
POPTR_0010s13480 Populus trichocarpa POPTR_0010s13480 N 0.000
POPTR_0008s11950 Populus trichocarpa POPTR_0008s11950 N 0.000
Sb09g025710 Sorghum bicolor Sb09g025710 N 0.000
Sb09g030780 Sorghum bicolor Sb09g030780 N 0.000
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N 0.000
TCM_009888 Theobroma cacao TCM_009888 N 0.000
Solyc05g009320.2 Solanum lycopersicum Solyc05g009320.2 N 0.000
Solyc03g119530.2 Solanum lycopersicum Solyc03g119530.2 N 0.000
Solyc02g085910.2 Solanum lycopersicum Solyc02g085910.2 N 0.000
Si022660m.g Setaria italica Si022660m.g N 0.000
Si004887m.g Setaria italica Si004887m.g N 0.000
Si002412m.g Setaria italica Si002412m.g N 0.000
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N 0.000
POPTR_0005s15670 Populus trichocarpa POPTR_0005s15670 N 0.000
POPTR_0004s09920 Populus trichocarpa POPTR_0004s09920 N 0.000
OMERI01G16320 Oryza meridionalis OMERI01G16320 N 0.000
OMERI01G01380 Oryza meridionalis OMERI01G01380 N 0.000
OLONG_008015 Oryza longistaminata OLONG_008015 N 0.000
OGLUM01G20320 Oryza glumaepatula OGLUM01G20320 N 0.000
OGLUM01G02100 Oryza glumaepatula OGLUM01G02100 N 0.000
OBART01G17510 Oryza barthii OBART01G17510 N 0.000
OBART01G01940 Oryza barthii OBART01G01940 N 0.000
OB01G27020 Oryza brachyantha OB01G27020 N 0.000
ONIVA01G02110 Oryza nivara ONIVA01G02110 N 0.000
ONIVA01G19320 Oryza nivara ONIVA01G19320 N 0.000
OPUNC01G01670 Oryza punctata OPUNC01G01670 N 0.000
PGSC0003DMG400014547 Solanum tuberosum PGSC0003DMG400014547 N 0.000
PGSC0003DMG400012653 Solanum tuberosum PGSC0003DMG400012653 N 0.000
PGSC0003DMG400005719 Solanum tuberosum PGSC0003DMG400005719 N 0.000
OS01G0511000 Oryza sativa OS01G0511000 N 0.000
ORUFI01G19440 Oryza rufipogon ORUFI01G19440 N 0.000
ORUFI01G02010 Oryza rufipogon ORUFI01G02010 N 0.000
ORGLA01G0016600 Oryza glaberrima ORGLA01G0016600 N 0.000
OPUNC01G18000 Oryza punctata OPUNC01G18000 N 0.000
OB01G11830 Oryza brachyantha OB01G11830 N 0.000