ENSP00000378472 (Macaca fascicularis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 ENSP00000378472 T333723_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tcf7
M00193_2.00
Mus musculus
HNHNNNNNN

NNNNNNDND
PBM
Badis et al.(2009)
Tcf7_0950
0.741 1.000
Tcf7
M03532_2.00
Mus musculus
AAASATCAAAGV

BCTTTGATSTTT
SELEX
Jolma et al.(2013)
Tcf7_1
0.741 1.000
TCF7
M05755_2.00
Homo sapiens
DSATCAAWS

SWTTGATSH
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_1
0.741 1.000
TCF7
M05756_2.00
Homo sapiens
WCWKCGYCYCGWTGW

WCAWCGRGRCGMWGW
SELEX
Yin et al.(2017)
TCF7_eDBD_HT-SELEX_2
0.741 1.000
TCF7
M05890_2.00
Homo sapiens
NNASATCAAASNN

NNSTTTGATSTNN
SMiLE-seq
Isakova et al.(2017)
TCF7
0.741 1.000
TCF7
M09386_2.00
Homo sapiens
NBBCTTTSAWSTBNBN

NVNVASWTSAAAGVVN
Misc
Kulakovskiy et al.(2013)
TCF7_HUMAN.H11MO.0.A
0.741 1.000
Tcf7
M09400_2.00
Mus musculus
VVRVADSAAARVVVNV

BNBBBYTTTSHTBYBB
Misc
Kulakovskiy et al.(2013)
TCF7_MOUSE.H11MO.0.A
0.741 1.000
TCF7
M11294_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5_01
0.741 1.000
TCF7
M11295_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF1_Q5
0.741 1.000
TCF7
M05757_2.00
Homo sapiens
RSATCAAAS

STTTGATSY
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_1
0.741 1.000
TCF7
M05758_2.00
Homo sapiens
WCAWCGRGRCGMWGW

WCWKCGYCYCGWTGW
SELEX
Yin et al.(2017)
TCF7_eDBD_Methyl-HT-SELEX_2
0.741 1.000
Tcf7l2
M00198_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Tcf7l2_3461
0.716 0.986
Tcf7l2
M02646_2.00
Mus musculus
SATCAAAGN

NCTTTGATS
SELEX
Hallikas et al.(2006)
Tcf4
0.716 0.986
TCF7L2
M08167_2.00
Homo sapiens
NVASWTCAAAGVVN

NBBCTTTGAWSTBN
ChIP-seq
Mathelier et al.(2014)
MA0523.1
0.716 0.986
TCF7L2
M09393_2.00
Homo sapiens
DGCAGSTGKS

SMCASCTGCH
Misc
Kulakovskiy et al.(2013)
ITF2_HUMAN.H11MO.0.C
0.716 0.986
TCF7L2
M09394_2.00
Homo sapiens
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_HUMAN.H11MO.0.A
0.716 0.986
Tcf7l2
M09401_2.00
Mus musculus
VVASWTCAAAGVV

BBCTTTGAWSTBB
Misc
Kulakovskiy et al.(2013)
TF7L2_MOUSE.H11MO.0.A
0.716 0.986
TCF7L2
M09638_2.00
Homo sapiens
CCTTTGAWST

ASWTCAAAGG
Misc
Heinz et al.(2010)
K562-TCF7L2_GSE29196
0.716 0.986
TCF7L2
M11316_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_01
0.716 0.986
TCF7L2
M11317_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5_02
0.716 0.986
TCF7L2
M11318_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF4_Q5
0.716 0.986
TCF7L2
M11319_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF7L2_06
0.716 0.986
Lef1
M00200_2.00
Mus musculus
NSWTCAAAVN

NBTTTGAWSN
PBM
Badis et al.(2009)
Lef1_3504
0.716 0.971
LEF1
M03511_2.00
Homo sapiens
NRAGATCAAAGRVWW

WWBYCTTTGATCTYN
SELEX
Jolma et al.(2013)
LEF1_1
0.716 0.971
LEF1
M05771_2.00
Homo sapiens
NSATCAAAS

STTTGATSN
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_1
0.716 0.971
LEF1
M05772_2.00
Homo sapiens
WCATCGRGRCGCTGW

WCAGCGYCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_HT-SELEX_2
0.716 0.971
LEF1
M05775_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_1
0.716 0.971
LEF1
M05776_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_HT-SELEX_2
0.716 0.971
LEF1
M05895_2.00
Homo sapiens
WTCAAAGNNN

NNNCTTTGAW
SMiLE-seq
Isakova et al.(2017)
LEF1
0.716 0.971
LEF1
M09392_2.00
Homo sapiens
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_HUMAN.H11MO.0.A
0.716 0.971
Lef1
M09402_2.00
Mus musculus
BSYTTTSWNNTBYH

DRVANNWSAAARSV
Misc
Kulakovskiy et al.(2013)
LEF1_MOUSE.H11MO.0.B
0.716 0.971
LEF1
M11311_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q2_01
0.716 0.971
LEF1
M11312_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q3
0.716 0.971
LEF1
M11313_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q4
0.716 0.971
LEF1
M11314_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5_01
0.716 0.971
LEF1
M11315_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LEF1_Q5
0.716 0.971
LEF1
M05773_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_1
0.716 0.971
LEF1
M05774_2.00
Homo sapiens
WCATCGRGGCGCTGW

WCAGCGCCYCGATGW
SELEX
Yin et al.(2017)
LEF1_eDBD_Methyl-HT-SELEX_2
0.716 0.971
LEF1
M05777_2.00
Homo sapiens
ASATCAAAG

CTTTGATST
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_1
0.716 0.971
LEF1
M05778_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
LEF1_FL_Methyl-HT-SELEX_2
0.716 0.971
Tcf7l1
M00207_2.00
Mus musculus
NNNNWWDN

NHWWNNNN
PBM
Badis et al.(2009)
Tcf3_3787
0.715 0.913
TCF7L1
M03512_2.00
Homo sapiens
AAAGATCAAAGG

CCTTTGATCTTT
SELEX
Jolma et al.(2013)
TCF7L1_1
0.715 0.913
TCF7L1
M05779_2.00
Homo sapiens
RSATCAAAG

CTTTGATSY
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_1
0.715 0.913
TCF7L1
M05780_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_HT-SELEX_2
0.715 0.913
TCF7L1
M09395_2.00
Homo sapiens
NBBCTTTGAWSTB

VASWTCAAAGVVN
Misc
Kulakovskiy et al.(2013)
TF7L1_HUMAN.H11MO.0.B
0.715 0.913
Tcf7l1
M09406_2.00
Mus musculus
BBCTTTGAWST

ASWTCAAAGVV
Misc
Kulakovskiy et al.(2013)
TF7L1_MOUSE.H11MO.0.A
0.715 0.913
Tcf7l1
M09407_2.00
Mus musculus
NDGCAGSTGBB

VVCASCTGCHN
Misc
Kulakovskiy et al.(2013)
TFE2_MOUSE.H11MO.0.A
0.715 0.913
TCF7L1
M11320_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_01
0.715 0.913
TCF7L1
M11321_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6_01
0.715 0.913
TCF7L1
M11322_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF3_Q6
0.715 0.913
TCF7L1
M05781_2.00
Homo sapiens
CTTTGATSY

RSATCAAAG
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_1
0.715 0.913
TCF7L1
M05782_2.00
Homo sapiens
ACATCGRGRCGCTGW

WCAGCGYCYCGATGT
SELEX
Yin et al.(2017)
TCF7L1_eDBD_Methyl-HT-SELEX_2
0.715 0.913
pan
M06451_2.00
Drosophila melanogaster
DWYCAAAD

HTTTGRWH
B1H
Zhu et al.(2011)
pan_FlyReg_FBgn0085432
0.695 0.913
pan
M08428_2.00
Drosophila melanogaster
WHNAAAVRNRSCGM

KCGSYNYBTTTNDW
ChIP-chip
Mathelier et al.(2014)
MA0237.2
0.695 0.913
pan
M11337_2.00
Drosophila melanogaster
AAGATCAAAGG

CCTTTGATCTT
Transfac
Matys et al.(2006)
I$TCF_1
0.695 0.913
pan
M11338_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TCF_Q6
0.695 0.913
pop-1
M00712_2.00
Caenorhabditis elegans
NNHDWVNNNN

NNNNBWHDNN
PBM
Narasimhan et al.(2015)
pTH9135
0.515 0.551
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000378472 Sox 170 238

Links

Other Sox family TFs
Other Macaca fascicularis TFs

511 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29333.m001059 Ricinus communis 29333.m001059 N 0.000
29912.m005288 Ricinus communis 29912.m005288 N 0.000
AMTR_s00155p00071520 Amborella trichopoda AMTR_s00155p00071520 N 0.000
Aquca_009_00676 Aquilegia coerulea Aquca_009_00676 N 0.000
Aquca_026_00359 Aquilegia coerulea Aquca_026_00359 N 0.000
Bo1g150420 Brassica oleracea Bo1g150420 N 0.000
Bo3g060160 Brassica oleracea Bo3g060160 N 0.000
Bo5g145140 Brassica oleracea Bo5g145140 N 0.000
Bo9g176100 Brassica oleracea Bo9g176100 N 0.000
Bostr.13129s0320 Boechera stricta Bostr.13129s0320 N 0.000
Bostr.2570s0105 Boechera stricta Bostr.2570s0105 N 0.000
Bra001164 Brassica rapa Bra001164 N 0.000
Bra009200 Brassica rapa Bra009200 N 0.000
Bra040529 Brassica rapa Bra040529 N 0.000
Cagra.2108s0005 Capsella grandiflora Cagra.2108s0005 N 0.000
Cagra.2117s0012 Capsella grandiflora Cagra.2117s0012 N 0.000
Carubv10001713m.g Capsella rubella Carubv10001713m.g N 0.000
cassava24247.valid.m1 Manihot esculenta cassava24247.valid.m1 N 0.000
cassava38260.valid.m1 Manihot esculenta cassava38260.valid.m1 I 0.000
cassava41983.valid.m1 Manihot esculenta cassava41983.valid.m1 N 0.000
Ca_00866 Cicer arietinum Ca_00866 N 0.000
Ca_10039 Cicer arietinum Ca_10039 N 0.000
Ca_11593 Cicer arietinum Ca_11593 N 0.000
Ca_14455 Cicer arietinum Ca_14455 N 0.000
Ca_20250 Cicer arietinum Ca_20250 N 0.000
chr1.CM0361.430.nc Lotus japonicus chr1.CM0361.430.nc N 0.000
chr5.CM0571.20.nd Lotus japonicus chr5.CM0571.20.nd N 0.000
Ciclev10012232m.g Citrus clementina Ciclev10012232m.g N 0.000
Cla015490 Citrullus lanatus Cla015490 I 0.000
Cla017115 Citrullus lanatus Cla017115 N 0.000
Cla017884 Citrullus lanatus Cla017884 N 0.000
Cucsa.127910 Cucumis sativus Cucsa.127910 I 0.000
Cucsa.241980 Cucumis sativus Cucsa.241980 N 0.000
Eucgr.C00842 Eucalyptus grandis Eucgr.C00842 N 0.000
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N 0.000
gene12709-v1.0-hybrid Fragaria vesca gene12709-v1.0-hybrid N 0.000
gene18295-v1.0-hybrid Fragaria vesca gene18295-v1.0-hybrid N 0.000
GLYMA02G35190 Glycine max GLYMA02G35190 N 0.000
GLYMA03G36140 Glycine max GLYMA03G36140 N 0.000
GLYMA09G02770 Glycine max GLYMA09G02770 N 0.000
GLYMA09G07960 Glycine max GLYMA09G07960 I 0.000
GLYMA10G10240 Glycine max GLYMA10G10240 N 0.000
GLYMA13G16770 Glycine max GLYMA13G16770 N 0.000
GLYMA15G13660 Glycine max GLYMA15G13660 N 0.000
GLYMA15G18970 Glycine max GLYMA15G18970 I 0.000
GLYMA16G00711 Glycine max GLYMA16G00711 I 0.000
GLYMA17G05920 Glycine max GLYMA17G05920 I 0.000
GLYMA19G38800 Glycine max GLYMA19G38800 N 0.000
Gorai.002G151800 Gossypium raimondii Gorai.002G151800 I 0.000
Gorai.002G234400 Gossypium raimondii Gorai.002G234400 N 0.000
Gorai.003G093300 Gossypium raimondii Gorai.003G093300 I 0.000
Gorai.007G363800 Gossypium raimondii Gorai.007G363800 N 0.000
Gorai.009G115000 Gossypium raimondii Gorai.009G115000 N 0.000
Gorai.013G226200 Gossypium raimondii Gorai.013G226200 I 0.000
GRMZM5G857944 Zea mays GRMZM5G857944 N 0.000
GSMUA_Achr7G01070_001 Musa acuminata GSMUA_Achr7G01070_001 N 0.000
GSMUA_Achr7G07860_001 Musa acuminata GSMUA_Achr7G07860_001 N 0.000
Lus10013592.g Linum usitatissimum Lus10013592.g N 0.000
Lus10021259.g Linum usitatissimum Lus10021259.g N 0.000
MDP0000129029 Malus domestica MDP0000129029 N 0.000
MDP0000223651 Malus domestica MDP0000223651 N 0.000
MDP0000279028 Malus domestica MDP0000279028 N 0.000
MDP0000375005 Malus domestica MDP0000375005 N 0.000
MDP0000506954 Malus domestica MDP0000506954 N 0.000
MDP0000588222 Malus domestica MDP0000588222 N 0.000
MDP0000785523 Malus domestica MDP0000785523 N 0.000
MDP0000827821 Malus domestica MDP0000827821 N 0.000
MDP0000948645 Malus domestica MDP0000948645 N 0.000
mgf023644m Mimulus guttatus mgf023644m N 0.000
mgf025421m Mimulus guttatus mgf025421m N 0.000
MTR_1g056530 Medicago truncatula MTR_1g056530 N 0.000
MTR_2g030170 Medicago truncatula MTR_2g030170 N 0.000
MTR_2g041090 Medicago truncatula MTR_2g041090 N 0.000
MTR_7g106450 Medicago truncatula MTR_7g106450 N 0.000
MTR_8g019540 Medicago truncatula MTR_8g019540 I 0.000
NF-YA10 Arabidopsis lyrata scaffold_600636.1 N 0.000
NFYA10 Arabidopsis thaliana AT5G06510 N 0.000
orange1.1g021081m.g Citrus sinensis orange1.1g021081m.g N 0.000
Pavir.Aa00318 Panicum virgatum Pavir.Aa00318 I 0.000
Pavir.J00945 Panicum virgatum Pavir.J00945 I 0.000
PGSC0003DMG400000272 Solanum tuberosum PGSC0003DMG400000272 N 0.000
PK20005.1 Cannabis sativa PK20005.1 N 0.000
PK21261.1 Cannabis sativa PK21261.1 I 0.000
PK26326.1 Cannabis sativa PK26326.1 N 0.000
Pm016266 Prunus mume Pm016266 N 0.000
Pm026038 Prunus mume Pm026038 N 0.000
Pm027028 Prunus mume Pm027028 N 0.000
POPTR_0006s14740 Populus trichocarpa POPTR_0006s14740 N 0.000
POPTR_0006s21640 Populus trichocarpa POPTR_0006s21640 N 0.000
POPTR_0016s06860 Populus trichocarpa POPTR_0016s06860 N 0.000
POPTR_0018s07220 Populus trichocarpa POPTR_0018s07220 N 0.000
PRUPE_ppa012173mg Prunus persica PRUPE_ppa012173mg N 0.000
PRUPE_ppa016008mg Prunus persica PRUPE_ppa016008mg N 0.000
PRUPE_ppa017366mg Prunus persica PRUPE_ppa017366mg N 0.000
SapurV1A.0087s0010 Salix purpurea SapurV1A.0087s0010 N 0.000
SapurV1A.0258s0010 Salix purpurea SapurV1A.0258s0010 N 0.000
SapurV1A.0980s0030 Salix purpurea SapurV1A.0980s0030 N 0.000
SapurV1A.1209s0040 Salix purpurea SapurV1A.1209s0040 N 0.000
SapurV1A.1588s0020 Salix purpurea SapurV1A.1588s0020 N 0.000
Sb04g034760 Sorghum bicolor Sb04g034760 I 0.000
Si019645m.g Setaria italica Si019645m.g N 0.000
Solyc12g009050.1 Solanum lycopersicum Solyc12g009050.1 N 0.000
TCM_022984 Theobroma cacao TCM_022984 N 0.000
TCM_024732 Theobroma cacao TCM_024732 I 0.000
TCM_037576 Theobroma cacao TCM_037576 N 0.000
Thhalv10014346m.g Eutrema salsugineum Thhalv10014346m.g N 0.000
Thhalv10021244m.g Eutrema salsugineum Thhalv10021244m.g N 0.000
UNE8 Arabidopsis lyrata fgenesh2_kg.3__563__AT3G05690.1 N 0.000
UNE8 Arabidopsis thaliana AT3G05690 N 0.000
VIT_06s0004g02270 Vitis vinifera VIT_06s0004g02270 N 0.000
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N 0.000
VIT_11s0016g01480 Vitis vinifera VIT_11s0016g01480 N 0.000