estExt_fgenesh2_pg.C_1070085 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgenesh2_pg.C_1070085 T334011_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_1070085 Sox 168 213

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI003297 Acyrthosiphon pisum ACYPI003297 I 0.565
AAEL008417 Aedes aegypti AAEL008417 N 0.580
ALNC14_126360 Albugo laibachii ALNC14_126360 N 0.475
ANCCAN_29654 Ancylostoma caninum ANCCAN_29654 N 0.602
ANCCEY_08672 Ancylostoma ceylanicum ANCCEY_08672 N 0.602
ACAC_0000409101 Angiostrongylus cantonensis ACAC_0000409101 N 0.602
ACOC_0001323101 Angiostrongylus costaricensis ACOC_0001323101 N 0.602
AALB007196 Anopheles albimanus AALB007196 N 0.630
AARA009694 Anopheles arabiensis AARA009694 N 0.662
AATE006267 Anopheles atroparvus AATE006267 N 0.601
ACHR002403 Anopheles christyi ACHR002403 N 0.662
ACOM033320 Anopheles coluzzii ACOM033320 N 0.662
ACUA003510 Anopheles culicifacies ACUA003510 N 0.662
ADAC009894 Anopheles darlingi ADAC009894 N 0.630
ADIR002941 Anopheles dirus ADIR002941 N 0.630
AEPI008570 Anopheles epiroticus AEPI008570 N 0.662
AFAF018499 Anopheles farauti AFAF018499 N 0.630
AFUN011346 Anopheles funestus AFUN011346 N 0.630
AGAP004110 Anopheles gambiae AGAP004110 N 0.662
AMAM021723 Anopheles maculatus AMAM021723 N 0.585
AMEC005071 Anopheles melas AMEC005071 N 0.662
AMEM002948 Anopheles merus AMEM002948 N 0.662
AMIN003838 Anopheles minimus AMIN003838 N 0.630
AQUA009805 Anopheles quadriannulatus AQUA009805 N 0.662
ASIS023527 Anopheles sinensis ASIS023527 N 0.634
ASTEI04275 Anopheles stephensi ASTEI04275 N 0.662
GB50764 Apis mellifera GB50764 I 0.615
ALUE_0001851001 Ascaris lumbricoides ALUE_0001851001 N 0.596
ASU_10445 Ascaris suum ASU_10445 N 0.596
ACEP12759 Atta cephalotes ACEP12759 I 0.608
BGIBMGA013514 Bombyx mori BGIBMGA013514 N 0.583
estExt_fgenesh2_pm.C_3240002 Branchiostoma floridae estExt_fgenesh2_pm.C_3240002 N 0.741
CBN09380 Caenorhabditis brenneri CBN09380 N 0.592
Y73E7A.1 Caenorhabditis elegans WBGene00022268 N 0.597
CJA05209 Caenorhabditis japonica CJA05209 N 0.592
CRE03905 Caenorhabditis remanei CRE03905 N 0.592
Cflo_06133--XP_394373.1_APIME Camponotus floridanus Cflo_06133--XP_394373.1_APIME I 0.615
CapteG224864 Capitella teleta CapteG224864 I 0.624
fgeneshCV_pg.C_scaffold_2000022 Chlorella vulgaris fgeneshCV_pg.C_scaffold_2000022 N 0.480
CLEC002888 Cimex lectularius CLEC002888 N 0.605
CLEC000086 Cimex lectularius CLEC000086 N 0.560
ENSCING00000023833 Ciona intestinalis ENSCING00000023833 N 0.481
fgenesh1_pm.2_#_13 Coccomyxa subellipsoidea C169 fgenesh1_pm.2_#_13 N 0.480
CGI_10019404 Crassostrea gigas CGI_10019404 N 0.669
Chro.20098 Cryptosporidium hominis Chro.20098 N 0.417
cgd2_870 Cryptosporidium parvum cgd2_870 N 0.461
CpipJ_CPIJ005084 Culex pipiens CpipJ_CPIJ005084 N 0.584
CPIJ005084 Culex quinquefasciatus CPIJ005084 N 0.584
KGM_20190 Danaus plexippus KGM_20190 I 0.621
DAPPUDRAFT_303074 Daphnia pulex DAPPUDRAFT_303074 N 0.577
DICVIV_03175 Dictyocaulus viviparus DICVIV_03175 N 0.602
DILT_0001250601 Diphyllobothrium latum DILT_0001250601 N 0.552
GH18160 Drosophila grimshawi FBgn0125628 I 0.547
GK13574 Drosophila willistoni FBgn0215582 I 0.547
GE25578 Drosophila yakuba FBgn0242642 I 0.547
ECPE_0001800901 Echinostoma caproni ECPE_0001800901 N 0.488
ETH_00032160 Eimeria tenella ETH_00032160 N 0.513
GPUH_0000676401 Gongylonema pulchrum GPUH_0000676401 N 0.596
GUITHDRAFT_162866 Guillardia theta GUITHDRAFT_162866 N 0.533
HCOI00594600 Haemonchus contortus HCOI00594600 N 0.602
HPLM_0000348901 Haemonchus placei HPLM_0000348901 N 0.602
HHAL005242-PA Halyomorpha halys HHAL005242-PA I 0.613
Hsal_04778--XP_394373.1_APIME Harpegnathos saltator Hsal_04778--XP_394373.1_APIME I 0.608
HMEL009197 Heliconius melpomene HMEL009197 N 0.576
HPBE_0001252601 Heligmosomoides bakeri HPBE_0001252601 N 0.602
HelroG66455 Helobdella robusta HelroG66455 N 0.621
ISCW011313 Ixodes scapularis ISCW011313 N 0.670
LotgiG126557 Lottia gigantea LotgiG126557 N 0.587
LCUP006380 Lucilia cuprina LCUP006380 N 0.502
cassava26804.m1 Manihot esculenta cassava26804.m1 I 0.439
MCINX012524 Melitaea cinxia MCINX012524 I 0.621
maker-nMf.1.1.scaf18285-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf18285-snap-gene-0.4 N 0.589
MhA1_Contig1250.frz3.gene10 Meloidogyne hapla MhA1_Contig1250.frz3.gene10 N 0.589
Minc12734 Meloidogyne incognita Minc12734 N 0.589
mgf019496m Mimulus guttatus mgf019496m I 0.433
ML11467a Mnemiopsis leidyi ML11467a N 0.451
GSMUA_Achr4G31310_001 Musa acuminata GSMUA_Achr4G31310_001 I 0.428
GSMUA_Achr4G22750_001 Musa acuminata GSMUA_Achr4G22750_001 I 0.428
MDOA001488 Musca domestica MDOA001488 I 0.598
NV13812 Nasonia vitripennis NV13812 I 0.626
NECAME_12352 Necator americanus NECAME_12352 N 0.591
NEMVEDRAFT_v1g201358 Nematostella vectensis NEMVEDRAFT_v1g201358 I 0.624
NCLIV_051130 Neospora caninum NCLIV_051130 N 0.475
NBR_0000605501 Nippostrongylus brasiliensis NBR_0000605501 N 0.602
Ocbimv22013575m.g Octopus bimaculoides Ocbimv22013575m.g I 0.653
OESDEN_05486 Oesophagostomum dentatum OESDEN_05486 N 0.591
T265_00523 Opisthorchis viverrini T265_00523 N 0.453
ccdc124 Oryzias latipes ENSORLG00000015728 N 0.624
PEQ_0000413701 Parascaris equorum PEQ_0000413701 N 0.596
PHUM036320 Pediculus humanus PHUM036320 N 0.665
estExt_fgenesh1_kg.C_80399 Phytophthora capsici estExt_fgenesh1_kg.C_80399 N 0.521
fgenesh1_pg.C_scaffold_73784000001 Phytophthora capsici fgenesh1_pg.C_scaffold_73784000001 N 0.521
fgenesh_scip_prom.46568.2049 Phytophthora kernoviae fgenesh_scip_prom.46568.2049 N 0.521
fgenesh_scip_prom.28083.7036 Phytophthora lateralis fgenesh_scip_prom.28083.7036 N 0.495
F443_19335 Phytophthora parasitica F443_19335 N 0.521
Phyra74523 Phytophthora ramorum Phyra74523 N 0.495
Physo132366 Phytophthora sojae Physo132366 N 0.521
maker-pir_contig_430-fgenesh-gene-0.3 Pythium irregulare maker-pir_contig_430-fgenesh-gene-0.3 N 0.532
maker-piw_contig_1911-snap-gene-0.6 Pythium iwayamai maker-piw_contig_1911-snap-gene-0.6 N 0.532
PYU1_G003004 Pythium ultimum PYU1_G003004 N 0.532
maker-pve_contig_105-snap-gene-0.29 Pythium vexans maker-pve_contig_105-snap-gene-0.29 N 0.488
RPRC009760 Rhodnius prolixus RPRC009760 N 0.555
SPRG_06372 Saprolegnia parasitica SPRG_06372 N 0.532
A_06553 Schistosoma haematobium A_06553 N 0.460
Sjc_0011880 Schistosoma japonicum Sjc_0011880 N 0.467
Smp_004360 Schistosoma mansoni Smp_004360 N 0.460
SMRZ_0002114501 Schistosoma margrebowiei SMRZ_0002114501 N 0.460
SMU15012775 Schmidtea mediterranea SMU15012775 N 0.453
SBAD_0000307901 Soboliphyme baturini SBAD_0000307901 N 0.565
SINV12391 Solenopsis invicta SINV12391 I 0.608
SPU_001776 Strongylocentrotus purpuratus SPU_001776 N 0.608
TELCIR_11967 Teladorsagia circumcincta TELCIR_11967 N 0.602
tetur18g00680 Tetranychus urticae tetur18g00680 I 0.601
TCLT_0001081001 Thelazia callipaeda TCLT_0001081001 N 0.596
TGME49_037260 Toxoplasma gondii TGME49_037260 N 0.506
TC004658 Tribolium castaneum TC004658 N 0.583
D917_07703 Trichinella nativa D917_07703 N 0.456
EFV51436 Trichinella spiralis EFV51436 N 0.456
TRE_0001918901 Trichobilharzia regenti TRE_0001918901 N 0.480
TMUE_s0148001000 Trichuris muris TMUE_s0148001000 N 0.425
D918_07944 Trichuris suis D918_07944 N 0.435
TTRE_0000309701 Trichuris trichiura TTRE_0000309701 N 0.481