CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pg.C_scaffold_7000434
(
Phanerochaete chrysosporium
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgenesh1_pg.C_scaffold_7000434
T334112_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.449
0.435
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.449
0.435
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.449
0.435
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.449
0.435
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.449
0.435
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_7000434
Sox
97
166
IPRPPNAFMLFRANFVRQRHVPGSIETNHGSLSKIIGNCWKALPDAEKKVWEARAKKAKAEHKEMYPNYR
Links
Other
Sox
family TFs
Other
Phanerochaete chrysosporium
TFs
409 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy