CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.12.394.1
(
Fragilariopsis cylindrus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
gw1.12.394.1
T334226_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.12.394.1
Sox
10
90
PTRALSAYNIFVQEKFAELAKKNDDALKSTDTNAQMRRVPPASLVKTTGTRWKALSEEEKSKYEEQAKADRKRYEEQMAKY
Links
Other
Sox
family TFs
Other
Fragilariopsis cylindrus
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PYU1_G004350
Pythium ultimum
PYU1_G004350
N
0.419
gww1.1.1.1342.1
Pichia stipitis
gww1.1.1.1342.1
I
0.416
PICST_23779
Scheffersomyces stipitis
PICST_23779
I
0.416