Aquca_013_00142 (Aquilegia coerulea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Aquca_013_00142 T334369_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB13
M07268_2.00
Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB

VYGGCGGHGRHDNNNVNRDND
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a
0.490 0.624
HMGB13
M07269_2.00
Arabidopsis thaliana
GGHGGHGGYGGHGGN

NCCDCCRCCDCCDCC
Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a
0.490 0.624
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_013_00142.1 Sox 178 243
Aquca_013_00142.1 Sox 295 361
Aquca_013_00142.1 Sox 423 491

Links

Other Sox family TFs
Other Aquilegia coerulea TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_10696 Aegilops tauschii F775_10696 N 0.419
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.449
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.478
HMGB6 Arabidopsis thaliana AT4G23800 I 0.431
HMGB13 Arabidopsis thaliana AT4G11080 D 0.490
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.431
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.467
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.503
Bra035256 Brassica rapa Bra035256 I 0.430
PK10992.1 Cannabis sativa PK10992.1 I 0.433
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.428
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.472
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.480
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.445
Ca_05811 Cicer arietinum Ca_05811 I 0.433
Cla011101 Citrullus lanatus Cla011101 I 0.490
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.421
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.465
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.447
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.446
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.473
MLOC_57360 Hordeum vulgare MLOC_57360 N 0.450
LPERR02G09420 Leersia perrieri LPERR02G09420 N 0.450
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.458
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.416
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.439
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.436
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.417
mgf015439m Mimulus guttatus mgf015439m I 0.513
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.439
OBART02G11160 Oryza barthii OBART02G11160 I 0.497
OB02G19930 Oryza brachyantha OB02G19930 N 0.452
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.497
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.497
OLONG_021730 Oryza longistaminata OLONG_021730 N 0.484
OMERI02G11890 Oryza meridionalis OMERI02G11890 N 0.467
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.497
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.499
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.497
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.508
Pavir.Ab01026 Panicum virgatum Pavir.Ab01026 I 0.515
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.444
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.503
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.482
Pm024077 Prunus mume Pm024077 I 0.491
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.491
30190.m010807 Ricinus communis 30190.m010807 I 0.453
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.533
Si017040m.g Setaria italica Si017040m.g I 0.474
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.437
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.437
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.532
TCM_016416 Theobroma cacao TCM_016416 I 0.478
Traes_2AL_72F4E1905 Triticum aestivum Traes_2AL_72F4E1905 I 0.486
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.481
GRMZM2G060253 Zea mays GRMZM2G060253 I 0.532