CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_Genemark1.C_10524
(
Coccomyxa subellipsoidea C169
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
estExt_Genemark1.C_10524
T334458_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
64298
Sox
52
106
KKGPRNAYQLFQKQSGPAILAKLGPTSLPERSRILAGAWKKLSDAEKATYAAQIV
64298
Sox
115
182
SLPRNTYQLFVRQSSTEILAKHPEVKTIADRSRVLAAEWKRVPAEEKDRLAAELKKIAPARAKRQKAP
64298
Sox
177
233
KRQKAPTINNFALYVKENFHRVSKEQPKPSAADVMRELGSAWKTLSDSQKAGYSTKA
Links
Other
Sox
family TFs
Other
Coccomyxa subellipsoidea C169
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_fgeneshCV_pg.C_10193
Chlorella vulgaris
estExt_fgeneshCV_pg.C_10193
N
0.463