CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PredSwiss_ASS2010_4380.1
(
Pneumocystis carinii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
PredSwiss_ASS2010_4380.1
T334944_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.655
0.585
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.655
0.585
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.488
0.431
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.464
0.400
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.464
0.400
Sox13
M00212_2.00
Mus musculus
RAACAATW
WATTGTTY
PBM
Badis et al.(2009)
Sox13_1718
0.432
0.446
SOX13
M08166_2.00
Homo sapiens
NNACAATGVNN
NNBCATTGTNN
ChIP-seq
Mathelier et al.(2014)
MA1120.1
0.432
0.446
Sox5
M00203_2.00
Mus musculus
ATTGTBNN
NNVACAAT
PBM
Badis et al.(2009)
Sox5_3459
0.432
0.431
SOX5
M05894_2.00
Homo sapiens
DVACAATRVN
NBYATTGTBH
SMiLE-seq
Isakova et al.(2017)
SOX5
0.432
0.431
Sox5
M02719_2.00
Mus musculus
NAACAAT
ATTGTTN
SELEX
Mathelier et al.(2014)
MA0087.1
0.432
0.431
SOX5
M09390_2.00
Homo sapiens
NAACAATN
NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_HUMAN.H11MO.0.C
0.432
0.431
Sox5
M09404_2.00
Mus musculus
NAACAATN
NATTGTTN
Misc
Kulakovskiy et al.(2013)
SOX5_MOUSE.H11MO.0.C
0.432
0.431
SOX5
M11309_2.00
Homo sapiens
NNAACAATNN
NNATTGTTNN
Transfac
Matys et al.(2006)
V$SOX5_01
0.432
0.431
SOX5
M11310_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX5_Q5
0.432
0.431
SRY
M03525_2.00
Homo sapiens
AACAATANCATTGTT
AACAATGNTATTGTT
SELEX
Jolma et al.(2013)
SRY_1
0.428
0.354
SRY
M03526_2.00
Homo sapiens
AACAATHHNCATTGTT
AACAATGNDDATTGTT
SELEX
Jolma et al.(2013)
SRY_2
0.428
0.354
SRY
M03527_2.00
Homo sapiens
TCAATAMCATTGA
TCAATGKTATTGA
SELEX
Jolma et al.(2013)
SRY_3
0.428
0.354
SRY
M03528_2.00
Homo sapiens
TGAATANCATTCA
TGAATGNTATTCA
SELEX
Jolma et al.(2013)
SRY_4
0.428
0.354
SRY
M05898_2.00
Homo sapiens
NACAATNV
BNATTGTN
SMiLE-seq
Isakova et al.(2017)
SRY
0.428
0.354
SRY
M02717_2.00
Homo sapiens
NDWAACAAW
WTTGTWWHN
SELEX
Mathelier et al.(2014)
MA0084.1
0.428
0.354
SRY
M09398_2.00
Homo sapiens
BWTTGTTWH
DWAACAAWV
Misc
Kulakovskiy et al.(2013)
SRY_HUMAN.H11MO.0.B
0.428
0.354
SRY
M11331_2.00
Homo sapiens
AAWSWMM
KKWSWTT
Transfac
Matys et al.(2006)
V$SRY_01
0.428
0.354
SRY
M11332_2.00
Homo sapiens
HBHWTTGTTWDN
NHWAACAAWDVD
Transfac
Matys et al.(2006)
V$SRY_02
0.428
0.354
SRY
M11333_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SRY_Q6
0.428
0.354
Sox6
M00828_2.00
Mus musculus
WTTGTNNNN
NNNNACAAW
PBM
Weirauch et al.(2013)
pTH3862
0.426
0.400
SOX6
M05892_2.00
Homo sapiens
DRACAATRVN
NBYATTGTYH
SMiLE-seq
Isakova et al.(2017)
SOX6
0.426
0.400
Sox6
M08169_2.00
Mus musculus
BCWTTGTYYY
RRRACAAWGV
ChIP-seq
Mathelier et al.(2014)
MA0515.1
0.426
0.400
Sox6
M09640_2.00
Mus musculus
BHWTTGTBNN
NNVACAAWDV
Misc
Heinz et al.(2010)
Myotubes-Sox6_GSE32627
0.426
0.400
SOX6
M11300_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SOX6_Q5
0.426
0.400
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.416
0.354
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.416
0.354
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.416
0.354
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.416
0.354
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.416
0.354
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PredSwiss_ASS2010_4380.1
Sox
56
120
IKRPLNSFMLYRRDKQSSIPTNNHQSISRIIGEMWKRETIEEKERYAEMAQRERERHAKEYPDYK
Links
Other
Sox
family TFs
Other
Pneumocystis carinii
TFs
671 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PPAI000658
Phlebotomus papatasi
PPAI000658
N
0.000
AATE001792
Anopheles atroparvus
AATE001792
N
0.000
AALB001249
Anopheles albimanus
AALB001249
N
0.000
LDEC009669
Leptinotarsa decemlineata
LDEC009669
N
0.000
LCUP011793
Lucilia cuprina
LCUP011793
N
0.000
HHAL008062-PA
Halyomorpha halys
HHAL008062-PA
N
0.000
CLEC011477
Cimex lectularius
CLEC011477
N
0.000
Hsal_08940--XP_396406.3_APIME
Harpegnathos saltator
Hsal_08940--XP_396406.3_APIME
N
0.000
Cflo_10152--XP_396406.3_APIME
Camponotus floridanus
Cflo_10152--XP_396406.3_APIME
N
0.000
YQE_12022
Dendroctonus ponderosae
YQE_12022
N
0.000
TC006481
Tribolium castaneum
TC006481
N
0.000
SINV21728
Solenopsis invicta
SINV21728
N
0.000
ACHR006752
Anopheles christyi
ACHR006752
N
0.000
ACOM040797
Anopheles coluzzii
ACOM040797
N
0.000
MDOA009101
Musca domestica
MDOA009101
N
0.000
LLOJ008249
Lutzomyia longipalpis
LLOJ008249
N
0.000
ASTEI06719
Anopheles stephensi
ASTEI06719
N
0.000
ASIS016478
Anopheles sinensis
ASIS016478
N
0.000
AMIN006550
Anopheles minimus
AMIN006550
N
0.000
AMEM013501
Anopheles merus
AMEM013501
N
0.000
AMAM021359
Anopheles maculatus
AMAM021359
N
0.000
AFUN002671
Anopheles funestus
AFUN002671
N
0.000
AFAF006351
Anopheles farauti
AFAF006351
N
0.000
ADIR009746
Anopheles dirus
ADIR009746
N
0.000
ACUA003717
Anopheles culicifacies
ACUA003717
N
0.000
RPRC008982
Rhodnius prolixus
RPRC008982
N
0.000
PHUM125110
Pediculus humanus
PHUM125110
N
0.000
GI18474
Drosophila mojavensis
FBgn0141213
N
0.000
GH23133
Drosophila grimshawi
FBgn0130590
N
0.000
GG19859
Drosophila erecta
FBgn0112060
N
0.000
GF11509
Drosophila ananassae
FBgn0088549
N
0.000
DAPPUDRAFT_314624
Daphnia pulex
DAPPUDRAFT_314624
N
0.000
CPIJ006499
Culex quinquefasciatus
CPIJ006499
N
0.000
BGIBMGA008943
Bombyx mori
BGIBMGA008943
N
0.000
AGAP010355
Anopheles gambiae
AGAP010355
N
0.000
ACYPI51366
Acyrthosiphon pisum
ACYPI51366
N
0.000
ACEP27450
Atta cephalotes
ACEP27450
N
0.000
AAEL013882
Aedes aegypti
AAEL013882
N
0.000
GM11763
Drosophila sechellia
FBgn0166706
N
0.000
GD24896
Drosophila simulans
FBgn0196212
N
0.000
NV13136
Nasonia vitripennis
NV13136
N
0.000
MESCA004127
Megaselia scalaris
MESCA004127
N
0.000
MCINX004651
Melitaea cinxia
MCINX004651
N
0.000
L798_10941
Zootermopsis nevadensis
L798_10941
N
0.000
KGM_02106
Danaus plexippus
KGM_02106
N
0.000
GB48690
Apis mellifera
GB48690
N
0.000
lov
Drosophila melanogaster
FBgn0266129
N
0.000
GA30490
Drosophila pseudoobscura
FBgn0265027
N
0.000
GE11385
Drosophila yakuba
FBgn0229197
N
0.000
GK21725
Drosophila willistoni
FBgn0223710
N
0.000
GJ21336
Drosophila virilis
FBgn0208466
N
0.000
CpipJ_CPIJ006499
Culex pipiens
CpipJ_CPIJ006499
N
0.000