PredSwiss_ASS2010_4380.1 (Pneumocystis carinii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PredSwiss_ASS2010_4380.1 T334944_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ste11
M11342_2.00 		Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH		 Transfac
Matys et al.(2006)
F$STE11_01 		0.655 0.585
ste11
M11343_2.00 		Schizosaccharomyces pombe Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$STE11_02 		0.655 0.585
fmf-1
M02491_2.00 		Neurospora crassa
TCTTTGTY
RACAAAGA		 PBM
Weirauch et al.(2014)
pTH8941 		0.488 0.431
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.464 0.400
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.464 0.400
Sox13
M00212_2.00 		Mus musculus
RAACAATW
WATTGTTY		 PBM
Badis et al.(2009)
Sox13_1718 		0.432 0.446
SOX13
M08166_2.00 		Homo sapiens
NNACAATGVNN
NNBCATTGTNN		 ChIP-seq
Mathelier et al.(2014)
MA1120.1 		0.432 0.446
Sox5
M00203_2.00 		Mus musculus
ATTGTBNN
NNVACAAT		 PBM
Badis et al.(2009)
Sox5_3459 		0.432 0.431
SOX5
M05894_2.00 		Homo sapiens
DVACAATRVN
NBYATTGTBH		 SMiLE-seq
Isakova et al.(2017)
SOX5 		0.432 0.431
Sox5
M02719_2.00 		Mus musculus
NAACAAT
ATTGTTN		 SELEX
Mathelier et al.(2014)
MA0087.1 		0.432 0.431
SOX5
M09390_2.00 		Homo sapiens
NAACAATN
NATTGTTN		 Misc
Kulakovskiy et al.(2013)
SOX5_HUMAN.H11MO.0.C 		0.432 0.431
Sox5
M09404_2.00 		Mus musculus
NAACAATN
NATTGTTN		 Misc
Kulakovskiy et al.(2013)
SOX5_MOUSE.H11MO.0.C 		0.432 0.431
SOX5
M11309_2.00 		Homo sapiens
NNAACAATNN
NNATTGTTNN		 Transfac
Matys et al.(2006)
V$SOX5_01 		0.432 0.431
SOX5
M11310_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX5_Q5 		0.432 0.431
SRY
M03525_2.00 		Homo sapiens
AACAATANCATTGTT
AACAATGNTATTGTT		 SELEX
Jolma et al.(2013)
SRY_1 		0.428 0.354
SRY
M03526_2.00 		Homo sapiens
AACAATHHNCATTGTT
AACAATGNDDATTGTT		 SELEX
Jolma et al.(2013)
SRY_2 		0.428 0.354
SRY
M03527_2.00 		Homo sapiens
TCAATAMCATTGA
TCAATGKTATTGA		 SELEX
Jolma et al.(2013)
SRY_3 		0.428 0.354
SRY
M03528_2.00 		Homo sapiens
TGAATANCATTCA
TGAATGNTATTCA		 SELEX
Jolma et al.(2013)
SRY_4 		0.428 0.354
SRY
M05898_2.00 		Homo sapiens
NACAATNV
BNATTGTN		 SMiLE-seq
Isakova et al.(2017)
SRY 		0.428 0.354
SRY
M02717_2.00 		Homo sapiens
NDWAACAAW
WTTGTWWHN		 SELEX
Mathelier et al.(2014)
MA0084.1 		0.428 0.354
SRY
M09398_2.00 		Homo sapiens
BWTTGTTWH
DWAACAAWV		 Misc
Kulakovskiy et al.(2013)
SRY_HUMAN.H11MO.0.B 		0.428 0.354
SRY
M11331_2.00 		Homo sapiens
AAWSWMM
KKWSWTT		 Transfac
Matys et al.(2006)
V$SRY_01 		0.428 0.354
SRY
M11332_2.00 		Homo sapiens
HBHWTTGTTWDN
NHWAACAAWDVD		 Transfac
Matys et al.(2006)
V$SRY_02 		0.428 0.354
SRY
M11333_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRY_Q6 		0.428 0.354
Sox6
M00828_2.00 		Mus musculus
WTTGTNNNN
NNNNACAAW		 PBM
Weirauch et al.(2013)
pTH3862 		0.426 0.400
SOX6
M05892_2.00 		Homo sapiens
DRACAATRVN
NBYATTGTYH		 SMiLE-seq
Isakova et al.(2017)
SOX6 		0.426 0.400
Sox6
M08169_2.00 		Mus musculus
BCWTTGTYYY
RRRACAAWGV		 ChIP-seq
Mathelier et al.(2014)
MA0515.1 		0.426 0.400
Sox6
M09640_2.00 		Mus musculus
BHWTTGTBNN
NNVACAAWDV		 Misc
Heinz et al.(2010)
Myotubes-Sox6_GSE32627 		0.426 0.400
SOX6
M11300_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX6_Q5 		0.426 0.400
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.416 0.354
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.416 0.354
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.416 0.354
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.416 0.354
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.416 0.354
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PredSwiss_ASS2010_4380.1 Sox 56 120

Links

Other Sox family TFs
Other Pneumocystis carinii TFs

671 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PPAI000658 Phlebotomus papatasi PPAI000658 N 0.000
AATE001792 Anopheles atroparvus AATE001792 N 0.000
AALB001249 Anopheles albimanus AALB001249 N 0.000
LDEC009669 Leptinotarsa decemlineata LDEC009669 N 0.000
LCUP011793 Lucilia cuprina LCUP011793 N 0.000
HHAL008062-PA Halyomorpha halys HHAL008062-PA N 0.000
CLEC011477 Cimex lectularius CLEC011477 N 0.000
Hsal_08940--XP_396406.3_APIME Harpegnathos saltator Hsal_08940--XP_396406.3_APIME N 0.000
Cflo_10152--XP_396406.3_APIME Camponotus floridanus Cflo_10152--XP_396406.3_APIME N 0.000
YQE_12022 Dendroctonus ponderosae YQE_12022 N 0.000
TC006481 Tribolium castaneum TC006481 N 0.000
SINV21728 Solenopsis invicta SINV21728 N 0.000
ACHR006752 Anopheles christyi ACHR006752 N 0.000
ACOM040797 Anopheles coluzzii ACOM040797 N 0.000
MDOA009101 Musca domestica MDOA009101 N 0.000
LLOJ008249 Lutzomyia longipalpis LLOJ008249 N 0.000
ASTEI06719 Anopheles stephensi ASTEI06719 N 0.000
ASIS016478 Anopheles sinensis ASIS016478 N 0.000
AMIN006550 Anopheles minimus AMIN006550 N 0.000
AMEM013501 Anopheles merus AMEM013501 N 0.000
AMAM021359 Anopheles maculatus AMAM021359 N 0.000
AFUN002671 Anopheles funestus AFUN002671 N 0.000
AFAF006351 Anopheles farauti AFAF006351 N 0.000
ADIR009746 Anopheles dirus ADIR009746 N 0.000
ACUA003717 Anopheles culicifacies ACUA003717 N 0.000
RPRC008982 Rhodnius prolixus RPRC008982 N 0.000
PHUM125110 Pediculus humanus PHUM125110 N 0.000
GI18474 Drosophila mojavensis FBgn0141213 N 0.000
GH23133 Drosophila grimshawi FBgn0130590 N 0.000
GG19859 Drosophila erecta FBgn0112060 N 0.000
GF11509 Drosophila ananassae FBgn0088549 N 0.000
DAPPUDRAFT_314624 Daphnia pulex DAPPUDRAFT_314624 N 0.000
CPIJ006499 Culex quinquefasciatus CPIJ006499 N 0.000
BGIBMGA008943 Bombyx mori BGIBMGA008943 N 0.000
AGAP010355 Anopheles gambiae AGAP010355 N 0.000
ACYPI51366 Acyrthosiphon pisum ACYPI51366 N 0.000
ACEP27450 Atta cephalotes ACEP27450 N 0.000
AAEL013882 Aedes aegypti AAEL013882 N 0.000
GM11763 Drosophila sechellia FBgn0166706 N 0.000
GD24896 Drosophila simulans FBgn0196212 N 0.000
NV13136 Nasonia vitripennis NV13136 N 0.000
MESCA004127 Megaselia scalaris MESCA004127 N 0.000
MCINX004651 Melitaea cinxia MCINX004651 N 0.000
L798_10941 Zootermopsis nevadensis L798_10941 N 0.000
KGM_02106 Danaus plexippus KGM_02106 N 0.000
GB48690 Apis mellifera GB48690 N 0.000
lov Drosophila melanogaster FBgn0266129 N 0.000
GA30490 Drosophila pseudoobscura FBgn0265027 N 0.000
GE11385 Drosophila yakuba FBgn0229197 N 0.000
GK21725 Drosophila willistoni FBgn0223710 N 0.000
GJ21336 Drosophila virilis FBgn0208466 N 0.000
CpipJ_CPIJ006499 Culex pipiens CpipJ_CPIJ006499 N 0.000