CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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csin108932
(
Clonorchis sinensis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
csin108932
T336130_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Sox102F
M03981_2.00
Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT
SELEX
Nitta et al.(2015)
Sox102F_1
0.425
0.704
Sox102F
M03982_2.00
Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN
SELEX
Nitta et al.(2015)
Sox102F_2
0.425
0.704
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
csin108932
Sox
201
254
ELRLQQACPDMHNSNISKFLGAKWKSMSAEAKQPYYEEQTRLSRLHMEEHPAYR
Links
Other
Sox
family TFs
Other
Clonorchis sinensis
TFs
155 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy