PTRK_0001068400 (Parastrongyloides trichosuri)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PTRK_0001068400 T336825_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.421 0.333
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.421 0.333
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.421 0.333
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.421 0.333
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.421 0.333
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PTRK_0001068400.1 Sox 38 106

Links

Other Sox family TFs
Other Parastrongyloides trichosuri TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPAL_0001526200 Strongyloides papillosus SPAL_0001526200 I 0.571
SVE_0008400 Strongyloides venezuelensis SVE_0008400 I 0.571
SSTP_0001261500 Strongyloides stercoralis SSTP_0001261500 I 0.571
ZBAI_00389 Zygosaccharomyces bailii ZBAI_00389 I 0.458
ZBAI_05541 Zygosaccharomyces bailii ZBAI_05541 I 0.458
ZYRO0C16214g Zygosaccharomyces rouxii ZYRO0C16214g I 0.452
TC007345 Tribolium castaneum TC007345 I 0.447
L804_01864 Cryptococcus gattii L804_01864 I 0.447
fgeneshTM_pg.4_#_200 Tremella mesenterica fgeneshTM_pg.4_#_200 I 0.447
CNA06070 Cryptococcus neoformans CNA06070 I 0.447
PGTG_06975 Puccinia graminis PGTG_06975 I 0.444
RHTO_04522 Rhodosporidium toruloides RHTO_04522 I 0.440
FIBRA_04233 Fibroporia radiculosa FIBRA_04233 I 0.437
PHUM534240 Pediculus humanus PHUM534240 I 0.437
DACRYDRAFT_24732 Dacryopinax sp DACRYDRAFT_24732 N 0.436
PV10_01892 Exophiala mesophila PV10_01892 I 0.435
HYDPIDRAFT_99715 Hydnomerulius pinastri HYDPIDRAFT_99715 N 0.430
Scas_Contig667.28 Saccharomyces castellii Scas_Contig667.28 I 0.426
NDAI_0A05180 Naumovozyma dairenensis NDAI_0A05180 I 0.426
NCAS_0A11120 Naumovozyma castellii NCAS_0A11120 I 0.426
CERSUDRAFT_118953 Ceriporiopsis subvermispora CERSUDRAFT_118953 N 0.426
V565_068660 Rhizoctonia solani V565_068660 I 0.424
Moror_17490 Moniliophthora roreri Moror_17490 I 0.424
CC1G_07030 Coprinopsis cinerea CC1G_07030 I 0.424
K437DRAFT_265905 Tilletiaria anomala K437DRAFT_265905 I 0.423
SAKL0B07656g Lachancea kluyveri SAKL0B07656g I 0.422
E5Q_03921 Mixia osmundae E5Q_03921 N 0.421
GLOTRDRAFT_141363 Gloeophyllum trabeum GLOTRDRAFT_141363 I 0.421
JAAARDRAFT_209433 Jaapia argillacea JAAARDRAFT_209433 I 0.421
ROX1 Saccharomyces cerevisiae YPR065W D 0.421
LACBIDRAFT_293340 Laccaria bicolor LACBIDRAFT_293340 N 0.420
LDEC020265 Leptinotarsa decemlineata LDEC020265 N 0.420
K443DRAFT_94014 Laccaria amethystina K443DRAFT_94014 N 0.420
JAAARDRAFT_182275 Jaapia argillacea JAAARDRAFT_182275 I 0.420
FIBRA_08093 Fibroporia radiculosa FIBRA_08093 N 0.419
M413DRAFT_445326 Hebeloma cylindrosporum M413DRAFT_445326 I 0.417
GSTUM_00008644001 Tuber melanosporum GSTUM_00008644001 I 0.417