DAPPUDRAFT_59366 (Daphnia pulex)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 DAPPUDRAFT_59366 T339568_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx20
M00835_2.00
Mus musculus
NRRGTGTBAN

NTVACACYYN
PBM
Weirauch et al.(2013)
pTH3777
0.845 0.775
TBX20
M03565_2.00
Homo sapiens
AGGTGTKARVGYGTGA

TCACRCBYTMACACCT
SELEX
Jolma et al.(2013)
TBX20_1
0.845 0.775
TBX20
M03566_2.00
Homo sapiens
AGGTGTGAAWDTSACACBT

AVGTGTSAHWTTCACACCT
SELEX
Jolma et al.(2013)
TBX20_2
0.845 0.775
TBX20
M03567_2.00
Homo sapiens
NNNDAGGTGTGAAND

HNTTCACACCTHNNN
SELEX
Jolma et al.(2013)
TBX20_3
0.845 0.775
TBX20
M03568_2.00
Homo sapiens
DAGGTGTGAWR

YWTCACACCTH
SELEX
Jolma et al.(2013)
TBX20_4
0.845 0.775
TBX20
M03569_2.00
Homo sapiens
AGGTGTKANGKTGTSA

TSACAMCNTMACACCT
SELEX
Jolma et al.(2013)
TBX20_5
0.845 0.775
TBX20
M05813_2.00
Homo sapiens
DAGGTGTKARSGTGTGAA

TTCACACSYTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_1
0.845 0.775
TBX20
M05814_2.00
Homo sapiens
NAGGTGTGAAWTTCACACCTN

NAGGTGTGAAWTTCACACCTN
SELEX
Yin et al.(2017)
TBX20_eDBD_HT-SELEX_2
0.845 0.775
TBX20
M05817_2.00
Homo sapiens
DRRGTGTBADVGYGTBAN

NTVACRCBHTVACACYYH
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_1
0.845 0.775
TBX20
M05818_2.00
Homo sapiens
WTCACACYTAGGTGTKAM

KTMACACCTARGTGTGAW
SELEX
Yin et al.(2017)
TBX20_FL_HT-SELEX_2
0.845 0.775
Tbx20
M09430_2.00
Mus musculus
NDSTGNTGACAGSN

NSCTGTCANCASHN
Misc
Kulakovskiy et al.(2013)
TBX20_MOUSE.H11MO.0.C
0.845 0.775
Tbx20
M09650_2.00
Mus musculus
SCTGTCADCASN

NSTGHTGACAGS
Misc
Heinz et al.(2010)
Heart-Tbx20_GSE29636
0.845 0.775
TBX20
M11385_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX20_05
0.845 0.775
TBX20
M05815_2.00
Homo sapiens
DAGGTGTKAASGYGTKAA

TTMACRCSTTMACACCTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_1
0.845 0.775
TBX20
M05816_2.00
Homo sapiens
DASGTGTGAWWWTCACACCTH

DAGGTGTGAWWWTCACACSTH
SELEX
Yin et al.(2017)
TBX20_eDBD_Methyl-HT-SELEX_2
0.845 0.775
TBX20
M05819_2.00
Homo sapiens
DRGGYGTBARVGYGTKAN

NTMACRCBYTVACRCCYH
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_1
0.845 0.775
TBX20
M05820_2.00
Homo sapiens
TTMACRCCTAVGTGTGAA

TTCACACBTAGGYGTKAA
SELEX
Yin et al.(2017)
TBX20_FL_Methyl-HT-SELEX_2
0.845 0.775
mid
M03994_2.00
Drosophila melanogaster
DAGGTGTKAN

NTMACACCTH
SELEX
Nitta et al.(2015)
mid_1
0.804 0.786
TBX18
M05797_2.00
Homo sapiens
DDAGGTGTGARV

BYTCACACCTHH
SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX
0.750 0.604
TBX18
M11380_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX18_01
0.750 0.604
TBX18
M05798_2.00
Homo sapiens
NDAGGYGTGAAN

NTTCACRCCTHN
SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX
0.750 0.604
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA

TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.744 0.599
TBX15
M03554_2.00
Homo sapiens
AGGTGTGAAATTCACACCT

AGGTGTGAATTTCACACCT
SELEX
Jolma et al.(2013)
TBX15_1
0.736 0.582
TBX15
M03555_2.00
Homo sapiens
AGGTGTGA

TCACACCT
SELEX
Jolma et al.(2013)
TBX15_2
0.736 0.582
TBX15
M05795_2.00
Homo sapiens
NRSGTGTBAN

NTVACACSYN
SELEX
Yin et al.(2017)
TBX15_eDBD_HT-SELEX
0.736 0.582
TBX15
M11378_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX15_01
0.736 0.582
TBX15
M11379_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX15_02
0.736 0.582
TBX15
M05796_2.00
Homo sapiens
NDSGYGTBAN

NTVACRCSHN
SELEX
Yin et al.(2017)
TBX15_eDBD_Methyl-HT-SELEX
0.736 0.582
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX72160 T-box 8 196

Links

Other T-box family TFs
Other Daphnia pulex TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29739.m003647 Ricinus communis 29739.m003647 I 0.000
29739.m003716 Ricinus communis 29739.m003716 I 0.000
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.000
AMTR_s00007p00268460 Amborella trichopoda AMTR_s00007p00268460 I 0.000
AMTR_s00025p00218200 Amborella trichopoda AMTR_s00025p00218200 N 0.000
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.000
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.000
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.000
Bo2g023630 Brassica oleracea Bo2g023630 I 0.000
Bo3g015600 Brassica oleracea Bo3g015600 I 0.000
Bo6g086740 Brassica oleracea Bo6g086740 I 0.000
Bo6g119120 Brassica oleracea Bo6g119120 I 0.000
Bo8g068370 Brassica oleracea Bo8g068370 I 0.000
Bo8g102870 Brassica oleracea Bo8g102870 I 0.000
Bo9g149820 Brassica oleracea Bo9g149820 I 0.000
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.000
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.000
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.000
Bra002377 Brassica rapa Bra002377 I 0.000
Bra003780 Brassica rapa Bra003780 I 0.000
Bra006599 Brassica rapa Bra006599 I 0.000
Bra015882 Brassica rapa Bra015882 I 0.000
Bra016518 Brassica rapa Bra016518 I 0.000
Bra020162 Brassica rapa Bra020162 I 0.000
Bra025719 Brassica rapa Bra025719 I 0.000
Bra031069 Brassica rapa Bra031069 I 0.000
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.000
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.000
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.000
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.000
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.000
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.000
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.000
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.000
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.000
Ca_01683 Cicer arietinum Ca_01683 I 0.000
Ca_09124 Cicer arietinum Ca_09124 I 0.000
Ca_19295 Cicer arietinum Ca_19295 I 0.000
Ca_19296 Cicer arietinum Ca_19296 I 0.000
Ca_19297 Cicer arietinum Ca_19297 I 0.000
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.000
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.000
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.000
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.000
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.000
Cla007584 Citrullus lanatus Cla007584 I 0.000
Cla011318 Citrullus lanatus Cla011318 I 0.000
Cla022291 Citrullus lanatus Cla022291 I 0.000
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.000
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.000
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.000
ERF016 Arabidopsis thaliana AT5G21960 I 0.000
ERF017 Arabidopsis thaliana AT1G19210 D 0.000
ERF018 Arabidopsis thaliana AT1G74930 D 0.000
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.000
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.000
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.000
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.000
F775_23111 Aegilops tauschii F775_23111 I 0.000
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.000
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.000
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.000
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.000
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.000
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.000
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.000
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.000
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.000
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.000
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.000
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.000
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.000
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.000
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.000
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.000
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.000
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.000
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.000
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.000
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.000
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.000
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.000
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.000
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.000
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.000
MDP0000649022 Malus domestica MDP0000649022 I 0.000
MDP0000704216 Malus domestica MDP0000704216 I 0.000
mgf021940m Mimulus guttatus mgf021940m I 0.000
mgf024162m Mimulus guttatus mgf024162m I 0.000
mgf025452m Mimulus guttatus mgf025452m I 0.000
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.000
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.000
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.000
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.000
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.000
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.000
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.000
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.000
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.000
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.000
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.000
OB08G24280 Oryza brachyantha OB08G24280 I 0.000
OBART08G16950 Oryza barthii OBART08G16950 I 0.000
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.000
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.000
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.000
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.000
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.000
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.000
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.000
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.000
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.000
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.000
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.000
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.000
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.000
OS02G0781300 Oryza sativa OS02G0781300 I 0.000
OS08G0454000 Oryza sativa OS08G0454000 I 0.000
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.000
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.000
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.000
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.000
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.000
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.000
PK18548.1 Cannabis sativa PK18548.1 I 0.000
Pm027117 Prunus mume Pm027117 I 0.000
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.000
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.000
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.000
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.000
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.000
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.000
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.000
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.000
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.000
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.000
Si008104m.g Setaria italica Si008104m.g I 0.000
Si015027m.g Setaria italica Si015027m.g I 0.000
Si019636m.g Setaria italica Si019636m.g I 0.000
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.000
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.000
TCM_037415 Theobroma cacao TCM_037415 I 0.000
TCM_037486 Theobroma cacao TCM_037486 I 0.000
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.000
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.000
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.000
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.000
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.000
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.000
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.000