tbx1 (Danio rerio)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00907 (T-box) IPR001699 ENSDARG00000031891 T339769_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbx1
M00832_2.00
Mus musculus
NRGTGTGAANN

NNTTCACACYN
PBM
Weirauch et al.(2013)
pTH3822
0.918 0.984
TBX1
M03570_2.00
Homo sapiens
ARGTGTKAAAWHARGTGTGA

TCACACYTDWTTTMACACYT
SELEX
Jolma et al.(2013)
TBX1_1
0.918 0.984
TBX1
M03571_2.00
Homo sapiens
AGGTGTGAWWTTCACACCT

AGGTGTGAAWWTCACACCT
SELEX
Jolma et al.(2013)
TBX1_2
0.918 0.984
TBX1
M03572_2.00
Homo sapiens
AGGTGTGA

TCACACCT
SELEX
Jolma et al.(2013)
TBX1_3
0.918 0.984
TBX1
M03573_2.00
Homo sapiens
YYTCACACMTYWRAGGTGTGAAA

TTTCACACCTYWRAKGTGTGARR
SELEX
Jolma et al.(2013)
TBX1_4
0.918 0.984
TBX1
M03574_2.00
Homo sapiens
YTCACACCTDKAGGTGTGAA

TTCACACCTMHAGGTGTGAR
SELEX
Jolma et al.(2013)
TBX1_5
0.918 0.984
TBX1
M05821_2.00
Homo sapiens
BDRGGTGTGARV

BYTCACACCYHV
SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX
0.918 0.984
Tbx1
M11386_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX1_07
0.918 0.984
TBX1
M05822_2.00
Homo sapiens
DNWGGTGTGARN

NYTCACACCWNH
SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX
0.918 0.984
org-1
M03988_2.00
Drosophila melanogaster
DRGTGTBAD

HTVACACYH
SELEX
Nitta et al.(2015)
org-1_1
0.741 0.720
org-1
M03989_2.00
Drosophila melanogaster
TRACACYTARGTGTGA

TCACACYTARGTGTYA
SELEX
Nitta et al.(2015)
org-1_2
0.741 0.720
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000040825 T-box 109 294
ENSDARP00000118808 T-box 117 302

Links

Other T-box family TFs
Other Danio rerio TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
csin111107 Clonorchis sinensis csin111107 I 0.000
D915_00091 Fasciola hepatica D915_00091 I 0.000
ECPE_0000786301 Echinostoma caproni ECPE_0000786301 I 0.000
SCUD_0000012301 Schistosoma curassoni SCUD_0000012301 I 0.000
Sjc_0001400 Schistosoma japonicum Sjc_0001400 I 0.000
Smp_097800 Schistosoma mansoni Smp_097800 I 0.000
SMRZ_0001938001 Schistosoma margrebowiei SMRZ_0001938001 I 0.000
SMTD_0001373001 Schistosoma mattheei SMTD_0001373001 I 0.000
SROB_0000030901 Schistosoma rodhaini SROB_0000030901 I 0.000
T265_14198 Opisthorchis viverrini T265_14198 I 0.000
TRE_0000129901 Trichobilharzia regenti TRE_0000129901 I 0.000
TRE_0000940901 Trichobilharzia regenti TRE_0000940901 I 0.000
TRE_0001884901 Trichobilharzia regenti TRE_0001884901 I 0.000