CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tbr1b
(
Tetraodon nigroviridis
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
ENSTNIG00000016497
T340536_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbr1
M01028_2.00
Mus musculus
DTVRCAMNYH
DRNKTGYBAH
PBM
SebePedros et al.(2013)
pTH2659
0.841
0.956
TBR1
M03560_2.00
Homo sapiens
AGGTGTGAAN
NTTCACACCT
SELEX
Jolma et al.(2013)
TBR1_1
0.841
0.956
TBR1
M03561_2.00
Homo sapiens
RAGGTGTGAAH
DTTCACACCTY
SELEX
Jolma et al.(2013)
TBR1_2
0.841
0.956
Eomes
M00215_2.00
Mus musculus
RDGTGYBANN
NNTVRCACHY
PBM
Badis et al.(2009)
Eomes_0921
0.806
0.847
EOMES
M03563_2.00
Homo sapiens
DAGGTGTGAWNNN
NNNWTCACACCTH
SELEX
Jolma et al.(2013)
EOMES_1
0.806
0.847
EOMES
M03564_2.00
Homo sapiens
TVACACNTNNNDRNGTGTGA
TCACACNYHNNNANGTGTBA
SELEX
Jolma et al.(2013)
EOMES_2
0.806
0.847
EOMES
M02752_2.00
Homo sapiens
AGGTGTGAW
WTCACACCT
SELEX
Jolma et al.(2010)
EOMES_monomer
0.806
0.847
EOMES
M05807_2.00
Homo sapiens
DAGGTGTGAN
NTCACACCTH
SELEX
Yin et al.(2017)
EOMES_eDBD_HT-SELEX
0.806
0.847
EOMES
M09647_2.00
Homo sapiens
ARGTGWKAAN
NTTMWCACYT
Misc
Heinz et al.(2010)
H9-Eomes_GSE26097
0.806
0.847
EOMES
M05808_2.00
Homo sapiens
NABGTGYKAH
DTMRCACVTN
SELEX
Yin et al.(2017)
EOMES_eDBD_Methyl-HT-SELEX
0.806
0.847
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000019596
T-box
205
391
VYLCNRALWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTNVIGNRVYHPDSPNTGAHWMRQEISFGKLKLTNNKGASNNTAQMVVLQSLHKYQPRLHVVEVNEDGTEDTSQPGRVQTFTFTETQFVAVTAYQNTDITQLKIDHNPFAKGFRD
Links
Other
T-box
family TFs
Other
Tetraodon nigroviridis
TFs
125 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy