cassava22625.valid.m1 (Manihot esculenta)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 cassava22625.valid.m1 T343098_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.862 0.862
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.862 0.862
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.862 0.862
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.838 0.838
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.838 0.838
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.838 0.838
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.838 0.838
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.838 0.838
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.838 0.838
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.838 0.838
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.838 0.838
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.838 0.838
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22625.valid.m1 TBP 23 105
cassava22625.valid.m1 TBP 113 196

Links

Other TBP family TFs
Other Manihot esculenta TFs

784 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_01405 Capronia coronata A1O1_01405 N 0.000
BAUCODRAFT_118634 Baudoinia compniacensis BAUCODRAFT_118634 I 0.000
Bcin04g01240 Botrytis cinerea Bcin04g01240 I 0.000
BN7_2350 Wickerhamomyces ciferrii BN7_2350 N 0.000
CCM_05008 Cordyceps militaris CCM_05008 N 0.000
CORT_0C04810 Candida orthopsilosis CORT_0C04810 N 0.000
CPAG_05114 Candida parapsilosis CPAG_05114 N 0.000
fgenesh1_pm.00168_#_452 Aspergillus carbonarius fgenesh1_pm.00168_#_452 I 0.000
FGRRES_03683 Fusarium graminearum FGRRES_03683 N 0.000
HMPREF1120_00436 Exophiala dermatitidis HMPREF1120_00436 N 0.000
MGU_03978 Metarhizium guizhouense MGU_03978 N 0.000
PV05_04146 Exophiala xenobiotica PV05_04146 N 0.000
PV06_05781 Exophiala oligosperma PV06_05781 N 0.000
PV06_06006 Exophiala oligosperma PV06_06006 N 0.000
PV07_03849 Cladophialophora immunda PV07_03849 N 0.000
PV07_06220 Cladophialophora immunda PV07_06220 N 0.000
PV08_04953 Exophiala spinifera PV08_04953 N 0.000
PV11_01869 Exophiala sideris PV11_01869 N 0.000
PV11_09753 Exophiala sideris PV11_09753 N 0.000
S40288_09357 Stachybotrys chartarum S40288_09357 N 0.000
SPOG_00690 Schizosaccharomyces cryophilus SPOG_00690 N 0.000
TSTA_122850 Talaromyces stipitatus TSTA_122850 I 0.000
Z518_10649 Rhinocladiella mackenziei Z518_10649 N 0.000