CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_037_00296
(
Aquilegia coerulea
)
TBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00352 (TBP)
IPR000814
Aquca_037_00296
T343147_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW
WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.847
0.847
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.868
0.868
SPT15
M11393_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.882
0.882
Tbp
M00216_2.00
Mus musculus
NWWWWAW
WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.827
0.827
TBP
M08231_2.00
Homo sapiens
YATTTGCATD
HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.838
0.838
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS
SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.838
0.838
Tbp
M09433_2.00
Mus musculus
VTATAAAARS
SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.838
0.838
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.802
0.802
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD
HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.802
0.802
TBP
M11390_2.00
Homo sapiens
KATAAATW
WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.844
0.844
TBP
M11391_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.827
0.827
TBP
M11392_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.827
0.827
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.838
0.838
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_037_00296.1
TBP
22
104
VPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKL
Aquca_037_00296.1
TBP
112
195
DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKNPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF
Aquca_037_00296.2
TBP
22
104
VPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKL
Aquca_037_00296.2
TBP
112
145
DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSVSD
Aquca_037_00296.3
TBP
22
104
VPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKL
Aquca_037_00296.3
TBP
112
145
DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSVSD
Aquca_037_00296.4
TBP
22
104
VPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKL
Aquca_037_00296.4
TBP
112
145
DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSVSD
Aquca_037_00296.5
TBP
22
48
LQVCTGAKSEQQSKLAARKYARIIQKL
Aquca_037_00296.5
TBP
56
139
DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKNPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF
Aquca_037_00296.6
TBP
1
43
MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKL
Aquca_037_00296.6
TBP
51
134
DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKNPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEF
Links
Other
TBP
family TFs
Other
Aquilegia coerulea
TFs
789 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy