GPLIN_001374400 (Globodera pallida)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 GPLIN_001374400 T343479_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.774 0.774
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.774 0.774
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.774 0.774
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.774 0.774
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.774 0.774
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.774 0.774
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.774 0.774
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.774 0.774
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.774 0.774
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.774 0.774
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001374400 TBP 180 219
GPLIN_001374400 TBP 246 329

Links

Other TBP family TFs
Other Globodera pallida TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PPA00840 Pristionchus pacificus PPA00840 I 0.895
CJA15284 Caenorhabditis japonica CJA15284 I 0.879
CBG09138 Caenorhabditis briggsae CBG09138 I 0.879
ASU_14498 Ascaris suum ASU_14498 I 0.879
CRE07760 Caenorhabditis remanei CRE07760 I 0.879
DME_0000305201 Dracunculus medinensis DME_0000305201 I 0.863
L596_g25394 Steinernema carpocapsae L596_g25394 I 0.847
RSKR_0000436900 Rhabditophanes kr3021 RSKR_0000436900 I 0.847
L898_g32593 Steinernema monticolum L898_g32593 I 0.831
EFV53163 Trichinella spiralis EFV53163 I 0.815
D917_07868 Trichinella nativa D917_07868 I 0.815
tbp Oryzias latipes ENSORLG00000010757 I 0.774
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.774
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.766
GB47180 Apis mellifera GB47180 I 0.758
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.758
KGM_04261 Danaus plexippus KGM_04261 I 0.758
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.758
PHUM533080 Pediculus humanus PHUM533080 I 0.758
ACEP14716 Atta cephalotes ACEP14716 I 0.758
MCINX007129 Melitaea cinxia MCINX007129 I 0.758
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.758
HMEL016424 Heliconius melpomene HMEL016424 I 0.758
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.758
TELCIR_11261 Teladorsagia circumcincta TELCIR_11261 I 0.752
ML03273a Mnemiopsis leidyi ML03273a I 0.750
TC008403 Tribolium castaneum TC008403 I 0.750
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.750
TBPL2 Gallus gallus ENSGALG00000012145 I 0.750
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.750
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.750
maker-nMf.1.1.scaf06410-snap-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf06410-snap-gene-0.8 I 0.742
TBPL2 Microcebus murinus ENSMICG00000000943 I 0.742
TBPL2 Canis familiaris ENSCAFG00000015052 I 0.742
Tal_R008176 Tyto alba Tal_R008176 I 0.734
GI18943 Drosophila mojavensis FBgn0141682 I 0.726
SMU15013179 Schmidtea mediterranea SMU15013179 I 0.726
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I 0.718
ENSOARG00000015944 Ovis aries ENSOARG00000015944 I 0.710
MVLG_00350 Microbotryum violaceum MVLG_00350 I 0.710
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I 0.710
WALSEDRAFT_33220 Wallemia sebi WALSEDRAFT_33220 I 0.702
estExt_fgenesh3_kg.C_20416 Heterobasidion annosum estExt_fgenesh3_kg.C_20416 I 0.702
gwh2.1.1035.1 Phanerochaete chrysosporium gwh2.1.1035.1 I 0.702
Moror_8271 Moniliophthora roreri Moror_8271 I 0.702
GALMADRAFT_264138 Galerina marginata GALMADRAFT_264138 I 0.702
HETIRDRAFT_242765 Heterobasidion irregulare HETIRDRAFT_242765 I 0.702
J056_000874 Wallemia ichthyophaga J056_000874 I 0.702
FOMPIDRAFT_1017649 Fomitopsis pinicola FOMPIDRAFT_1017649 I 0.702
FIBRA_07233 Fibroporia radiculosa FIBRA_07233 I 0.702
AGABI2DRAFT_44722 Agaricus bisporus AGABI2DRAFT_44722 I 0.702
BN946_scf185000.g31 Trametes cinnabarina BN946_scf185000.g31 I 0.702
TBPL2 Cavia porcellus ENSCPOG00000006151 I 0.702
M378DRAFT_176716 Amanita muscaria M378DRAFT_176716 I 0.702
PHACADRAFT_256913 Phanerochaete carnosa PHACADRAFT_256913 I 0.702
SERLA73DRAFT_76226 Serpula lacrymans SERLA73DRAFT_76226 I 0.702
SOCG_04191 Schizosaccharomyces octosporus SOCG_04191 I 0.702
tbp1 Schizosaccharomyces pombe SPAC29E6.08 I 0.702
SCLCIDRAFT_144717 Scleroderma citrinum SCLCIDRAFT_144717 I 0.702
PISMIDRAFT_684343 Pisolithus microcarpus PISMIDRAFT_684343 I 0.702
PHLGIDRAFT_111859 Phlebiopsis gigantea PHLGIDRAFT_111859 I 0.702
PILCRDRAFT_51869 Piloderma croceum PILCRDRAFT_51869 I 0.702
SPOG_00351 Schizosaccharomyces cryophilus SPOG_00351 I 0.702