fgenesh2_kg.4__2764__AT2G45680.1 (Arabidopsis lyrata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 fgenesh2_kg.4__2764__AT2G45680.1 T343843_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN

NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.983 0.968
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC

GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.983 0.968
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN

NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.983 0.968
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC

GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.976 0.790
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC

GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.970 0.613
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV

BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.970 0.613
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC

GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.968 0.613
PCF2
M11399_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.960 0.516
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.958 0.565
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC

GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.958 0.556
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC

GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.958 0.500
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH

DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.958 0.500
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW

WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.958 0.500
TCP15
M11394_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.958 0.500
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC

GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.957 0.484
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC

GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.956 0.484
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC

GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.956 0.476
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN

NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.956 0.468
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC

GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.956 0.468
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC

GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.956 0.468
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH

DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.956 0.468
TCP20
M11397_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.956 0.468
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN

NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.954 0.500
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC

GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.952 0.468
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH

DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.947 0.460
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC

GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.944 0.492
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN

NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.939 0.452
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN

NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.939 0.452
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN

NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.929 0.444
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH

DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.929 0.444
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC

GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.929 0.419
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN

NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.929 0.411
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC

GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.928 0.435
TCP11
M11395_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_01
0.889 0.411
TCP11
M11396_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP11_02
0.889 0.411
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__2764__AT2G45680.1 TCP 73 196

Links

Other TCP family TFs
Other Arabidopsis lyrata TFs

650 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
estExt_Genewise1.C_40222 Cryphonectria parasitica estExt_Genewise1.C_40222 N 0.000
SAPIO_CDS7458 Scedosporium apiospermum SAPIO_CDS7458 N 0.000
S40288_03133 Stachybotrys chartarum S40288_03133 N 0.000
PODANS_1_17550 Podospora anserina PODANS_1_17550 N 0.000
PFICI_10667 Pestalotiopsis fici PFICI_10667 N 0.000
OIDMADRAFT_62375 Oidiodendron maius OIDMADRAFT_62375 N 0.000
OIDMADRAFT_62312 Oidiodendron maius OIDMADRAFT_62312 N 0.000
OIDMADRAFT_174720 Oidiodendron maius OIDMADRAFT_174720 N 0.000
NEUTE1DRAFT_89140 Neurospora tetrasperma NEUTE1DRAFT_89140 N 0.000
SMAC_05040 Sordaria macrospora SMAC_05040 N 0.000
THITE_2111974 Thielavia terrestris THITE_2111974 N 0.000
TRIATDRAFT_127907 Trichoderma atroviride TRIATDRAFT_127907 N 0.000
NCU02142 Neurospora crassa NCU02142 N 0.000
estExt_fgenesh3_kg.C_20127 Neurospora discreta estExt_fgenesh3_kg.C_20127 N 0.000
X797_006320 Metarhizium robertsii X797_006320 N 0.000
VHEMI02872 Torrubiella hemipterigena VHEMI02872 N 0.000
V499_03539 Pseudogymnoascus pannorum V499_03539 N 0.000
V499_02967 Pseudogymnoascus pannorum V499_02967 N 0.000
UV8b_1816 Ustilaginoidea virens UV8b_1816 N 0.000
TRIREDRAFT_122523 Trichoderma reesei TRIREDRAFT_122523 N 0.000
MYCTH_2313964 Myceliophthora thermophila MYCTH_2313964 N 0.000
MGU_03571 Metarhizium guizhouense MGU_03571 N 0.000
MGG_03711 Magnaporthe oryzae MGG_03711 N 0.000
CPUR_05147 Claviceps purpurea CPUR_05147 N 0.000
Cob_05014 Colletotrichum orbiculare Cob_05014 N 0.000
CMQ_3062 Grosmannia clavigera CMQ_3062 N 0.000
CH063_06178 Colletotrichum higginsianum CH063_06178 N 0.000
CGGC5_5314 Colletotrichum gloeosporioides CGGC5_5314 N 0.000
CFIO01_12453 Colletotrichum fioriniae CFIO01_12453 N 0.000
CCM_03378 Cordyceps militaris CCM_03378 N 0.000
BBA_09641 Beauveria bassiana BBA_09641 N 0.000
CSUB01_03564 Colletotrichum sublineola CSUB01_03564 N 0.000
F503_02282 Ophiostoma piceae uamh F503_02282 N 0.000
FFUJ_06005 Fusarium fujikuroi FFUJ_06005 N 0.000
MBR_08021 Metarhizium brunneum MBR_08021 N 0.000
MBM_01057 Marssonina brunnea MBM_01057 N 0.000
MAJ_03898 Metarhizium majus MAJ_03898 N 0.000
HMPREF1624_04956 Sporothrix schenckii HMPREF1624_04956 N 0.000
GMDG_07896 Pseudogymnoascus destructans GMDG_07896 N 0.000
GLRG_02520 Colletotrichum graminicola GLRG_02520 N 0.000
GGTG_00991 Gaeumannomyces graminis GGTG_00991 N 0.000
FOXG_08872 Fusarium oxysporum FOXG_08872 N 0.000
ACRE_026230 Acremonium chrysogenum ACRE_026230 N 0.000