MTR_3g026050 (Medicago truncatula)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 MTR_3g026050 T344039_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.947 0.537
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.943 0.528
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.930 0.455
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.901 0.455
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.901 0.455
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.888 0.431
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.888 0.431
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.872 0.415
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.869 0.398
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.837 0.358
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.837 0.358
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.823 0.350
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.823 0.350
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES69260 TCP 55 236

Links

Other TCP family TFs
Other Medicago truncatula TFs

337 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000017065 Ailuropoda melanoleuca ENSAMEG00000017065 N 0.000
Alligator_sinensis_CCG003708.1 Alligator sinensis Alligator_sinensis_CCG003708.1 N 0.000
ENSAMXG00000008132 Astyanax mexicanus ENSAMXG00000008132 N 0.000
ENSBTAP00000019870-D1 Bos grunniens ENSBTAP00000019870-D1 N 0.000
NPAS4 Bos taurus ENSBTAG00000014925 N 0.000
NPAS4 Callithrix jacchus ENSCJAG00000001482 N 0.000
NPAS4 Canis familiaris ENSCAFG00000012711 N 0.000
NPAS4 Cavia porcellus ENSCPOG00000000685 N 0.000
Cmyd_10013223 Chelonia mydas Cmyd_10013223 N 0.000
ENSCSAG00000008212 Chlorocebus sabaeus ENSCSAG00000008212 N 0.000
npas4a Danio rerio ENSDARG00000055752 N 0.000
npas4b Danio rerio ENSDARG00000087753 N 0.000
NPAS4 Dasypus novemcinctus ENSDNOG00000042408 N 0.000
NPAS4 Echinops telfairi ENSETEG00000003654 N 0.000
NPAS4 Equus caballus ENSECAG00000013683 N 0.000
NPAS4 Erinaceus europaeus ENSEEUG00000004685 N 0.000
NPAS4 Felis catus ENSFCAG00000009299 N 0.000
ENSGMOG00000003455 Gadus morhua ENSGMOG00000003455 N 0.000
npas4a Gasterosteus aculeatus ENSGACG00000017076 N 0.000
NPAS4 Gorilla gorilla ENSGGOG00000008608 N 0.000
NPAS4 Homo sapiens ENSG00000174576 N 0.000
ENSSTOG00000023146 Ictidomys tridecemlineatus ENSSTOG00000023146 N 0.000
ENSLOCG00000000650 Lepisosteus oculatus ENSLOCG00000000650 N 0.000
NPAS4 Loxodonta africana ENSLAFG00000011138 N 0.000
ENSP00000311196 Macaca fascicularis ENSP00000311196 N 0.000
NPAS4 Macaca mulatta ENSMMUG00000015982 N 0.000
ENSMEUG00000004384 Macropus eugenii ENSMEUG00000004384 N 0.000
NPAS4 Microcebus murinus ENSMICG00000003754 N 0.000
NPAS4 Monodelphis domestica ENSMODG00000008299 N 0.000
ENSMPUG00000003040 Mustela putorius furo ENSMPUG00000003040 N 0.000
Npas4 Mus musculus ENSMUSG00000045903 N 0.000
Myotis_brandtii_NPAS4_10030769 Myotis brandtii Myotis_brandtii_NPAS4_10030769 N 0.000
NPAS4 Myotis lucifugus ENSMLUG00000004042 N 0.000
NPAS4 Ochotona princeps ENSOPRG00000008977 N 0.000
Ogr08183 Ophisaurus gracilis Ogr08183 N 0.000
ENSONIG00000005476 Oreochromis niloticus ENSONIG00000005476 N 0.000
NPAS4 Oryctolagus cuniculus ENSOCUG00000000905 N 0.000
npas4a Oryzias latipes ENSORLG00000001999 N 0.000
NPAS4 Otolemur garnettii ENSOGAG00000010446 N 0.000
ENSOARG00000005005 Ovis aries ENSOARG00000005005 N 0.000
NPAS4 Pan troglodytes ENSPTRG00000003923 N 0.000
ENSPANG00000007006 Papio anubis ENSPANG00000007006 N 0.000
ENSPFOG00000009551 Poecilia formosa ENSPFOG00000009551 N 0.000
Pvit_07066 Pogona vitticeps Pvit_07066 N 0.000
ENSPPYG00000003026 Pongo abelii ENSPPYG00000003026 N 0.000
NPAS4 Pteropus vampyrus ENSPVAG00000001233 N 0.000
Npas4 Rattus norvegicus ENSRNOG00000020009 N 0.000
ENSSHAG00000009488 Sarcophilus harrisii ENSSHAG00000009488 N 0.000
NPAS4 Sorex araneus ENSSARG00000003603 N 0.000
NPAS4 Sus scrofa ENSSSCG00000012942 N 0.000
npas4a Takifugu rubripes ENSTRUG00000011857 N 0.000
ENSTSYG00000001991 Tarsius syrichta ENSTSYG00000001991 N 0.000
npas4a Tetraodon nigroviridis ENSTNIG00000016823 N 0.000
NPAS4 Tursiops truncatus ENSTTRG00000001951 N 0.000
npas4 Xenopus tropicalis XB-GENE-993002 N 0.000
ENSXMAG00000013170 Xiphophorus maculatus ENSXMAG00000013170 N 0.000