Cucsa.273460 (Cucumis sativus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cucsa.273460 T344647_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.952 0.553
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.952 0.553
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.950 0.520
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.950 0.520
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.950 0.520
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.941 0.512
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.901 0.415
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.891 0.406
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.891 0.398
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.867 0.382
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.848 0.374
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.841 0.358
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.839 0.366
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.839 0.366
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.273460.1 TCP 37 237

Links

Other TCP family TFs
Other Cucumis sativus TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CSP4 Arabidopsis thaliana AT2G21060 D 0.000
Pm020837 Prunus mume Pm020837 I 0.000
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.000
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.000
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.000
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.000
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.000
mgf015980m Mimulus guttatus mgf015980m I 0.000
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.000
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.000
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.000
PK26692.1 Cannabis sativa PK26692.1 I 0.000
Bo3g141510 Brassica oleracea Bo3g141510 I 0.000
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.000
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.000
PK03316.1 Cannabis sativa PK03316.1 N 0.000
PK11650.1 Cannabis sativa PK11650.1 N 0.000
mgf014458m Mimulus guttatus mgf014458m N 0.000
mgf001526m Mimulus guttatus mgf001526m N 0.000
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.000
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.000
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.000
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.000
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.000
MDP0000225222 Malus domestica MDP0000225222 N 0.000
MDP0000202739 Malus domestica MDP0000202739 N 0.000
MDP0000155077 Malus domestica MDP0000155077 N 0.000
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.000
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.000
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.000
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.000
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.000
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.000
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.000
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.000
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.000
Cla016088 Citrullus lanatus Cla016088 N 0.000
Ca_11038 Cicer arietinum Ca_11038 N 0.000
ONIVA02G01490 Oryza nivara ONIVA02G01490 N 0.000
OMERI02G00930 Oryza meridionalis OMERI02G00930 N 0.000
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N 0.000
OBART02G01600 Oryza barthii OBART02G01600 N 0.000
LPERR02G01370 Leersia perrieri LPERR02G01370 N 0.000
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.000
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.000
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.000
GLYMA04G00660 Glycine max GLYMA04G00660 N 0.000
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.000
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.000
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N 0.000
BGIOSGA007226 Oryza indica BGIOSGA007226 N 0.000
OPUNC02G01060 Oryza punctata OPUNC02G01060 N 0.000
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N 0.000
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.000
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.000
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.000
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.000
Solyc01g111280.2 Solanum lycopersicum Solyc01g111280.2 N 0.000
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N 0.000
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N 0.000
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.000
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.000
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N 0.000
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.000
OS02G0121100 Oryza sativa OS02G0121100 N 0.000
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N 0.000
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N 0.000