CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10004002m.g
(
Eutrema salsugineum
)
TCR/CxC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03638 (TCR)
IPR005172
Thhalv10004002m.g
T346161_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN
NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672
0.893
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH
DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672
0.813
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672
0.813
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672
0.813
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672
0.813
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672
0.787
lin54
M02526_2.00
Danio rerio
NHTYRAAH
DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672
0.653
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672
0.653
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672
0.640
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH
DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672
0.640
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH
DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672
0.640
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672
0.640
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672
0.640
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672
0.640
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672
0.627
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672
0.627
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672
0.627
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672
0.627
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672
0.613
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN
NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672
0.613
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN
NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672
0.613
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW
WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672
0.600
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672
0.600
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672
0.600
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672
0.573
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY
RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672
0.560
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN
NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672
0.547
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH
DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672
0.493
For this family, TFs with SR scores >
0.660
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10004002m
TCR/CxC
154
190
QRHCNCKNSRCLKLYCECFASGSYCNGCNCLNCHNNL
Thhalv10004002m
TCR/CxC
238
275
SKGCHCKKSGCLKKYCECFQANVLCSENCRCQDCKNFD
Links
Other
TCR/CxC
family TFs
Other
Eutrema salsugineum
TFs
1213 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R002107
Calypte anna
Aan_R002107
I
0.000
Cmyd_10012142
Chelonia mydas
Cmyd_10012142
I
0.000
Cmyd_10017645
Chelonia mydas
Cmyd_10017645
I
0.000
ENSAMEG00000015618
Ailuropoda melanoleuca
ENSAMEG00000015618
I
0.000
ENSAMEG00000019033
Ailuropoda melanoleuca
ENSAMEG00000019033
I
0.000
ENSAMXG00000024953
Astyanax mexicanus
ENSAMXG00000024953
N
0.000
ENSCPOG00000004662
Cavia porcellus
ENSCPOG00000004662
I
0.000
ENSCSAG00000000399
Chlorocebus sabaeus
ENSCSAG00000000399
I
0.000
ENSCSAG00000018431
Chlorocebus sabaeus
ENSCSAG00000018431
I
0.000
ENSGMOG00000005169
Gadus morhua
ENSGMOG00000005169
N
0.000
ENSLACG00000002633
Latimeria chalumnae
ENSLACG00000002633
I
0.000
ENSLACG00000010446
Latimeria chalumnae
ENSLACG00000010446
I
0.000
ENSLACG00000010664
Latimeria chalumnae
ENSLACG00000010664
I
0.000
ENSLOCG00000011531
Lepisosteus oculatus
ENSLOCG00000011531
I
0.000
ENSLOCG00000011560
Lepisosteus oculatus
ENSLOCG00000011560
N
0.000
ENSMEUG00000001133
Macropus eugenii
ENSMEUG00000001133
I
0.000
ENSMEUG00000016604
Macropus eugenii
ENSMEUG00000016604
I
0.000
ENSMODG00000014458
Monodelphis domestica
ENSMODG00000014458
I
0.000
ENSMPUG00000019178
Mustela putorius furo
ENSMPUG00000019178
I
0.000
ENSMPUG00000019699
Mustela putorius furo
ENSMPUG00000019699
I
0.000
ENSNLEG00000016424
Nomascus leucogenys
ENSNLEG00000016424
I
0.000
ENSOARG00000000293
Ovis aries
ENSOARG00000000293
I
0.000
ENSOARG00000005615
Ovis aries
ENSOARG00000005615
I
0.000
ENSONIG00000021289
Oreochromis niloticus
ENSONIG00000021289
N
0.000
ENSP00000242462
Macaca fascicularis
ENSP00000242462
I
0.000
ENSP00000242462-D1
Bos grunniens
ENSP00000242462-D1
I
0.000
ENSP00000317333-D1
Bos grunniens
ENSP00000317333-D1
I
0.000
ENSPANG00000003722
Papio anubis
ENSPANG00000003722
I
0.000
ENSPANG00000004407
Papio anubis
ENSPANG00000004407
I
0.000
ENSPFOG00000019983
Poecilia formosa
ENSPFOG00000019983
N
0.000
ENSPMAG00000006182
Petromyzon marinus
ENSPMAG00000006182
I
0.000
ENSPPYG00000002380
Pongo abelii
ENSPPYG00000002380
I
0.000
ENSPPYG00000015008
Pongo abelii
ENSPPYG00000015008
I
0.000
ENSPSIG00000001125
Pelodiscus sinensis
ENSPSIG00000001125
I
0.000
ENSSHAG00000002586
Sarcophilus harrisii
ENSSHAG00000002586
I
0.000
ENSSHAG00000006703
Sarcophilus harrisii
ENSSHAG00000006703
I
0.000
ENSSTOG00000011758
Ictidomys tridecemlineatus
ENSSTOG00000011758
I
0.000
ENSSTOG00000026959
Ictidomys tridecemlineatus
ENSSTOG00000026959
I
0.000
ENSTSYG00000001849
Tarsius syrichta
ENSTSYG00000001849
I
0.000
ENSTSYG00000006329
Tarsius syrichta
ENSTSYG00000006329
I
0.000
estExt_fgenesh2_kg.C_7600001
Branchiostoma floridae
estExt_fgenesh2_kg.C_7600001
I
0.000
estExt_fgenesh2_pg.C_90049
Branchiostoma floridae
estExt_fgenesh2_pg.C_90049
I
0.000
ISCW020498
Ixodes scapularis
ISCW020498
I
0.000
neurog1
Oryzias latipes
ENSORLG00000020531
N
0.000
neurog1
Xenopus tropicalis
XB-GENE-491452
N
0.000
neurog1
Takifugu rubripes
ENSTRUG00000000532
N
0.000
NEUROG1
Ornithorhynchus anatinus
ENSOANG00000003865
I
0.000
NEUROG1
Anolis carolinensis
ENSACAG00000001255
I
0.000
neurog1
Danio rerio
ENSDARG00000056130
N
0.000
Neurog2
Rattus norvegicus
ENSRNOG00000010972
I
0.000
NEUROG2
Homo sapiens
ENSG00000178403
D
0.000
NEUROG2
Felis catus
ENSFCAG00000010711
I
0.000
NEUROG2
Dasypus novemcinctus
ENSDNOG00000010840
I
0.000
NEUROG2
Choloepus hoffmanni
ENSCHOG00000000513
I
0.000
NEUROG2
Canis familiaris
ENSCAFG00000025325
I
0.000
NEUROG2
Callithrix jacchus
ENSCJAG00000003772
I
0.000
NEUROG2
Bos taurus
ENSBTAG00000015259
I
0.000
NEUROG2
Anolis carolinensis
ENSACAG00000023148
N
0.000
NEUROG2
Pan troglodytes
ENSPTRG00000016376
I
0.000
NEUROG2
Gorilla gorilla
ENSGGOG00000017054
I
0.000
Neurog2
Mus musculus
ENSMUSG00000027967
D
0.000
NEUROG2
Otolemur garnettii
ENSOGAG00000029479
I
0.000
NEUROG2
Monodelphis domestica
ENSMODG00000005712
I
0.000
NEUROG2
Macaca mulatta
ENSMMUG00000014078
I
0.000
NEUROG2
Oryctolagus cuniculus
ENSOCUG00000007063
I
0.000
NEUROG3
Bos taurus
ENSBTAG00000006431
I
0.000
NEUROG3
Oryctolagus cuniculus
ENSOCUG00000027045
I
0.000
NEUROG3
Otolemur garnettii
ENSOGAG00000005928
I
0.000
Neurog3
Mus musculus
ENSMUSG00000044312
I
0.000
NEUROG3
Canis familiaris
ENSCAFG00000023597
I
0.000
neurog3
Xenopus tropicalis
XB-GENE-876279
I
0.000
NEUROG3
Gorilla gorilla
ENSGGOG00000002752
I
0.000
NEUROG3
Choloepus hoffmanni
ENSCHOG00000004116
I
0.000
NEUROG3
Myotis lucifugus
ENSMLUG00000024120
I
0.000
NEUROG3
Macaca mulatta
ENSMMUG00000008956
I
0.000
NEUROG3
Pan troglodytes
ENSPTRG00000002576
I
0.000
NEUROG3
Loxodonta africana
ENSLAFG00000028187
I
0.000
NEUROG3
Homo sapiens
ENSG00000122859
I
0.000
NEUROG3
Echinops telfairi
ENSETEG00000015577
I
0.000
NEUROG3
Monodelphis domestica
ENSMODG00000012228
I
0.000
neurog3
Danio rerio
ENSDARG00000016951
I
0.000
NEUROG3
Tursiops truncatus
ENSTTRG00000008216
I
0.000
NEUROG3
Callithrix jacchus
ENSCJAG00000016485
I
0.000
neurog3.S
Xenopus laevis
XB-GENE-6055069
I
0.000
Ogr11668
Ophisaurus gracilis
Ogr11668
I
0.000
Ogr17531
Ophisaurus gracilis
Ogr17531
I
0.000
Pvit_00533
Pogona vitticeps
Pvit_00533
I
0.000
Pvit_01880
Pogona vitticeps
Pvit_01880
I
0.000
SPU_007147
Strongylocentrotus purpuratus
SPU_007147
N
0.000
XP_002935814
Xenopus tropicalis
XP_002935814
I
0.000