Thhalv10004002m.g (Eutrema salsugineum)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 Thhalv10004002m.g T346161_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN

NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672 0.893
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH

DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672 0.813
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN

NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672 0.813
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW

WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672 0.813
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN

NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672 0.813
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH

DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672 0.787
lin54
M02526_2.00
Danio rerio
NHTYRAAH

DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672 0.653
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW

WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672 0.653
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH

DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672 0.640
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH

DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672 0.640
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH

DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672 0.640
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN

NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672 0.640
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW

WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672 0.640
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW

WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672 0.640
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN

NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672 0.627
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH

DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672 0.627
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW

WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672 0.627
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW

WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672 0.627
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN

NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672 0.613
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN

NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672 0.613
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN

NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672 0.613
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW

WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672 0.600
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN

NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672 0.600
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA

TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672 0.600
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH

DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672 0.573
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY

RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672 0.560
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN

NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672 0.547
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH

DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672 0.493
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10004002m TCR/CxC 154 190
Thhalv10004002m TCR/CxC 238 275

Links

Other TCR/CxC family TFs
Other Eutrema salsugineum TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R002107 Calypte anna Aan_R002107 I 0.000
Cmyd_10012142 Chelonia mydas Cmyd_10012142 I 0.000
Cmyd_10017645 Chelonia mydas Cmyd_10017645 I 0.000
ENSAMEG00000015618 Ailuropoda melanoleuca ENSAMEG00000015618 I 0.000
ENSAMEG00000019033 Ailuropoda melanoleuca ENSAMEG00000019033 I 0.000
ENSAMXG00000024953 Astyanax mexicanus ENSAMXG00000024953 N 0.000
ENSCPOG00000004662 Cavia porcellus ENSCPOG00000004662 I 0.000
ENSCSAG00000000399 Chlorocebus sabaeus ENSCSAG00000000399 I 0.000
ENSCSAG00000018431 Chlorocebus sabaeus ENSCSAG00000018431 I 0.000
ENSGMOG00000005169 Gadus morhua ENSGMOG00000005169 N 0.000
ENSLACG00000002633 Latimeria chalumnae ENSLACG00000002633 I 0.000
ENSLACG00000010446 Latimeria chalumnae ENSLACG00000010446 I 0.000
ENSLACG00000010664 Latimeria chalumnae ENSLACG00000010664 I 0.000
ENSLOCG00000011531 Lepisosteus oculatus ENSLOCG00000011531 I 0.000
ENSLOCG00000011560 Lepisosteus oculatus ENSLOCG00000011560 N 0.000
ENSMEUG00000001133 Macropus eugenii ENSMEUG00000001133 I 0.000
ENSMEUG00000016604 Macropus eugenii ENSMEUG00000016604 I 0.000
ENSMODG00000014458 Monodelphis domestica ENSMODG00000014458 I 0.000
ENSMPUG00000019178 Mustela putorius furo ENSMPUG00000019178 I 0.000
ENSMPUG00000019699 Mustela putorius furo ENSMPUG00000019699 I 0.000
ENSNLEG00000016424 Nomascus leucogenys ENSNLEG00000016424 I 0.000
ENSOARG00000000293 Ovis aries ENSOARG00000000293 I 0.000
ENSOARG00000005615 Ovis aries ENSOARG00000005615 I 0.000
ENSONIG00000021289 Oreochromis niloticus ENSONIG00000021289 N 0.000
ENSP00000242462 Macaca fascicularis ENSP00000242462 I 0.000
ENSP00000242462-D1 Bos grunniens ENSP00000242462-D1 I 0.000
ENSP00000317333-D1 Bos grunniens ENSP00000317333-D1 I 0.000
ENSPANG00000003722 Papio anubis ENSPANG00000003722 I 0.000
ENSPANG00000004407 Papio anubis ENSPANG00000004407 I 0.000
ENSPFOG00000019983 Poecilia formosa ENSPFOG00000019983 N 0.000
ENSPMAG00000006182 Petromyzon marinus ENSPMAG00000006182 I 0.000
ENSPPYG00000002380 Pongo abelii ENSPPYG00000002380 I 0.000
ENSPPYG00000015008 Pongo abelii ENSPPYG00000015008 I 0.000
ENSPSIG00000001125 Pelodiscus sinensis ENSPSIG00000001125 I 0.000
ENSSHAG00000002586 Sarcophilus harrisii ENSSHAG00000002586 I 0.000
ENSSHAG00000006703 Sarcophilus harrisii ENSSHAG00000006703 I 0.000
ENSSTOG00000011758 Ictidomys tridecemlineatus ENSSTOG00000011758 I 0.000
ENSSTOG00000026959 Ictidomys tridecemlineatus ENSSTOG00000026959 I 0.000
ENSTSYG00000001849 Tarsius syrichta ENSTSYG00000001849 I 0.000
ENSTSYG00000006329 Tarsius syrichta ENSTSYG00000006329 I 0.000
estExt_fgenesh2_kg.C_7600001 Branchiostoma floridae estExt_fgenesh2_kg.C_7600001 I 0.000
estExt_fgenesh2_pg.C_90049 Branchiostoma floridae estExt_fgenesh2_pg.C_90049 I 0.000
ISCW020498 Ixodes scapularis ISCW020498 I 0.000
neurog1 Oryzias latipes ENSORLG00000020531 N 0.000
neurog1 Xenopus tropicalis XB-GENE-491452 N 0.000
neurog1 Takifugu rubripes ENSTRUG00000000532 N 0.000
NEUROG1 Ornithorhynchus anatinus ENSOANG00000003865 I 0.000
NEUROG1 Anolis carolinensis ENSACAG00000001255 I 0.000
neurog1 Danio rerio ENSDARG00000056130 N 0.000
Neurog2 Rattus norvegicus ENSRNOG00000010972 I 0.000
NEUROG2 Homo sapiens ENSG00000178403 D 0.000
NEUROG2 Felis catus ENSFCAG00000010711 I 0.000
NEUROG2 Dasypus novemcinctus ENSDNOG00000010840 I 0.000
NEUROG2 Choloepus hoffmanni ENSCHOG00000000513 I 0.000
NEUROG2 Canis familiaris ENSCAFG00000025325 I 0.000
NEUROG2 Callithrix jacchus ENSCJAG00000003772 I 0.000
NEUROG2 Bos taurus ENSBTAG00000015259 I 0.000
NEUROG2 Anolis carolinensis ENSACAG00000023148 N 0.000
NEUROG2 Pan troglodytes ENSPTRG00000016376 I 0.000
NEUROG2 Gorilla gorilla ENSGGOG00000017054 I 0.000
Neurog2 Mus musculus ENSMUSG00000027967 D 0.000
NEUROG2 Otolemur garnettii ENSOGAG00000029479 I 0.000
NEUROG2 Monodelphis domestica ENSMODG00000005712 I 0.000
NEUROG2 Macaca mulatta ENSMMUG00000014078 I 0.000
NEUROG2 Oryctolagus cuniculus ENSOCUG00000007063 I 0.000
NEUROG3 Bos taurus ENSBTAG00000006431 I 0.000
NEUROG3 Oryctolagus cuniculus ENSOCUG00000027045 I 0.000
NEUROG3 Otolemur garnettii ENSOGAG00000005928 I 0.000
Neurog3 Mus musculus ENSMUSG00000044312 I 0.000
NEUROG3 Canis familiaris ENSCAFG00000023597 I 0.000
neurog3 Xenopus tropicalis XB-GENE-876279 I 0.000
NEUROG3 Gorilla gorilla ENSGGOG00000002752 I 0.000
NEUROG3 Choloepus hoffmanni ENSCHOG00000004116 I 0.000
NEUROG3 Myotis lucifugus ENSMLUG00000024120 I 0.000
NEUROG3 Macaca mulatta ENSMMUG00000008956 I 0.000
NEUROG3 Pan troglodytes ENSPTRG00000002576 I 0.000
NEUROG3 Loxodonta africana ENSLAFG00000028187 I 0.000
NEUROG3 Homo sapiens ENSG00000122859 I 0.000
NEUROG3 Echinops telfairi ENSETEG00000015577 I 0.000
NEUROG3 Monodelphis domestica ENSMODG00000012228 I 0.000
neurog3 Danio rerio ENSDARG00000016951 I 0.000
NEUROG3 Tursiops truncatus ENSTTRG00000008216 I 0.000
NEUROG3 Callithrix jacchus ENSCJAG00000016485 I 0.000
neurog3.S Xenopus laevis XB-GENE-6055069 I 0.000
Ogr11668 Ophisaurus gracilis Ogr11668 I 0.000
Ogr17531 Ophisaurus gracilis Ogr17531 I 0.000
Pvit_00533 Pogona vitticeps Pvit_00533 I 0.000
Pvit_01880 Pogona vitticeps Pvit_01880 I 0.000
SPU_007147 Strongylocentrotus purpuratus SPU_007147 N 0.000
XP_002935814 Xenopus tropicalis XP_002935814 I 0.000