Carubv10023501m.g (Capsella rubella)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Carubv10023501m.g T351575_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GRF9
M07370_2.00
Arabidopsis thaliana
NTGTCAGANNHNNVH

DBNNDNNTCTGACAN
Dap-seq
OMalley et al.(2016)
GRF9_col_a
0.976 0.976
GRF9
M07371_2.00
Arabidopsis thaliana
TGTCAGAN

NTCTGACA
Dap-seq
OMalley et al.(2016)
GRF9_colamp_a
0.976 0.976
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023501m WRC 14 56
Carubv10023501m WRC 238 279

Links

Other WRC family TFs
Other Capsella rubella TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF021 Arabidopsis thaliana AT1G71450 D 0.000
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.000
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.000
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.000
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.000
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.000
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.000
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.000
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.000
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.000
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.000
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.000
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.000
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.000
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.000
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.000
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.000
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.000
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.000
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.000
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.000
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.000
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.000
MDP0000283350 Malus domestica MDP0000283350 I 0.000
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.000
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.000
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.000
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.000
28118.m000034 Ricinus communis 28118.m000034 I 0.000
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.000
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.000
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.000
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.000
Bra016136 Brassica rapa Bra016136 I 0.000
Bra010210 Brassica rapa Bra010210 I 0.000
Bra007975 Brassica rapa Bra007975 I 0.000
Bra003924 Brassica rapa Bra003924 I 0.000
Bo8g027240 Brassica oleracea Bo8g027240 I 0.000
Bo6g113020 Brassica oleracea Bo6g113020 I 0.000
Bo6g094210 Brassica oleracea Bo6g094210 I 0.000
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.000
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.000
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.000
Pm004269 Prunus mume Pm004269 I 0.000
Cla012665 Citrullus lanatus Cla012665 I 0.000
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.000
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.000
TCM_036270 Theobroma cacao TCM_036270 I 0.000
TCM_036269 Theobroma cacao TCM_036269 I 0.000
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.000
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.000
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.000
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.000
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.000
Bo2g072910 Brassica oleracea Bo2g072910 I 0.000